1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...acaagaattggaactgcatgctttacttagcaatcagttctattgtcaagacaaatagatttgcgttaaataacaatggatattggaatatgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGGTAAGATCATTACATGCTTGGTAGAGTATTGCAAGAGGGTCTTGCTTCACAAAC
species | Glycine max |
transcript | GLYMA16G06850.2 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACAC AATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGGEST: gi|37994622|gb|CF806296.1|CF806296
genomic: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatgttcct ... tgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGG
EST: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACAC AATTAGAGGTGATCAGNCA-CATTTTGTTCGCAGAGATGAGTTGAAEST: gi|15661712|gb|BI699083.1|BI699083
genomic: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatgttcct ... tgttttgcagAATTAGAGGTGATCAG-CAACATTTTGTTCGCAGAGATGAGTTGAA
EST: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACAC NATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGG
genomic: TATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatgttcct ... tgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGG
tcaagacaaatagatttgcgttaaataacaatggatattggaatatgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGGTAAGATCATTACATGCTTGGTAGAGTATTGCAAGAGGGTCTTGCTTCACAAAC
aaataac putative branch site (score: 2)
ttaaataacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaagaattggaactgcatgctttacttagcaatcagttctattgtcaagacaaatagatttgcgttaaataacaatggatattggaatatgttttgcagAATTAGAGGTGATCAGCAACATTTTGTTCGCAGAGATGAGTTGAAGGTAAGATCATTACATGCTTGGTAGAGTATTGCAAGAGGGTCTTGCTTCACAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG