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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttagtgttggtaatgggcaggtccaggtcttaagatttcaaatctctattaatgtgaactgaaatgcaaatttggttatgcatgcagAAACATATACTGAACAACCTTGAACAACTTCTGTTGATATTGGACAACAAAGTTAGGTTTATATTAGGGGTTGTGAATGGAGAAATTGTCGTGAGCAACA

Basic information

species Glycine max
transcript GLYMA15G43170.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193420810|gb|FK385805.1|FK385805
EST:     TTCTCGAAGAATTCTTCCCACTTCGGCTGGAGTATTATGAGAGAAGAAAG                         AAACATATACTGAACAACCTTGAACAACTTCTGTTGATATTGGACAACAAA
genomic: TTCTCGAAGAATTCTTCCCACTTCGGCTGGAGTATTATGAGAGAAGAAAGgtgagtttag ... atgcatgcagAAACATATACTGAACAACCTTGAACAACTTCTGTTGATATTGGACAACAAA
EST: gi|208173513|gb|GD970218.1|GD970218
EST:     GGAGTATTATGAGAGAAGAAAG                         AAACATATACTGAACAACCTTGAACAACTTCTGTTGATATTGGACAACAAA
genomic: GGAGTATTATGAGAGAAGAAAGgtgagtttag ... atgcatgcagAAACATATACTGAACAACCTTGAACAACTTCTGTTGATATTGGACAACAAA
EST: gi|207793339|gb|GD764293.1|GD764293
EST:     CTTCCCACTTCGGCTGGAGTATTATGAGAGAAGAAAG                         AAACATATACTGAACAACCTTGAACAACTTCTGTTGATATTGGACAACAAA
genomic: CTTCCCACTTCGGCTGGAGTATTATGAGAGAAGAAAGgtgagtttag ... atgcatgcagAAACATATACTGAACAACCTTGAACAACTTCTGTTGATATTGGACAACAAA
EST: gi|208153744|gb|GD956113.1|GD956113
EST:     GAAGAATTCTTCCCACTTCGGTCTGGAGTATTATGAGAGAAGAAAG                         AAACATATACTGAACAACCTTGAACAACTTCTGTTGACATTGGACAACAAA
genomic: GAAGAATTCTTCCCACTTCGG-CTGGAGTATTATGAGAGAAGAAAGgtgagtttag ... atgcatgcagAAACATATACTGAACAACCTTGAACAACTTCTGTTGATATTGGACAACAAA
EST: gi|208062403|gb|GD858073.1|GD858073
EST:     TTCTCGAAGAATTCTTCCCACTTCGGCTGGAGTATTATGAGAGAAGAAAG                         AAACATATACTGAACAACCTTGAACAACTTCTGTTGATATTGGACAACAAA
genomic: TTCTCGAAGAATTCTTCCCACTTCGGCTGGAGTATTATGAGAGAAGAAAGgtgagtttag ... atgcatgcagAAACATATACTGAACAACCTTGAACAACTTCTGTTGATATTGGACAACAAA
EST: gi|193339286|gb|FK303527.1|FK303527
EST:     TTCTCGAAGAATTCTTCCCACTTCGGCTGGAGTATTATGAGAGAAGAAAG                         AAACATATACTGAACAACCTTGAACAACTTCTGTTGATATTGGACAACAAA
genomic: TTCTCGAAGAATTCTTCCCACTTCGGCTGGAGTATTATGAGAGAAGAAAGgtgagtttag ... atgcatgcagAAACATATACTGAACAACCTTGAACAACTTCTGTTGATATTGGACAACAAA
EST: gi|193350604|gb|FK316306.1|FK316306
EST:     TTCTCGAAGAATTCTTCCCACTTCGGCTGGAGTATTATGAGAGAAGAAAG                         AAACATATACTGTAACAACCTTGAACAACTTCTGTTGATATTGGACAACAA
genomic: TTCTCGAAGAATTCTTCCCACTTCGGCTGGAGTATTATGAGAGAAGAAAGgtgagtttag ... atgcatgcagAAACATATACTG-AACAACCTTGAACAACTTCTGTTGATATTGGACAACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatttcaaatctctattaatgtgaactgaaatgcaaatttggttatgcatgcagAAACATATACTGAACAACCTTGAACAACTTCTGTTGATATTGGACAACAAAGTTAGGTTTATATTAGGGGTTGTGAATGGAGAAATTGTCGTGAGCAACA
              tattaat  putative branch site (score: 2)
       aaatctctattaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtttagtgttggtaatgggcaggtccaggtcttaagatttcaaatctctattaatgtgaactgaaatgcaaatttggttatgcatgcagAAACATATACTGAACAACCTTGAACAACTTCTGTTGATATTGGACAACAAAGTTAGGTTTATATTAGGGGTTGTGAATGGAGAAATTGTCGTGAGCAACA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA