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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttccgattaattttattcttttattctgtttcaacactgtaaatattgcttttgcatgaatgttagactgatttctcagttatctagGGTGGTCTTGATGATAGCGGTGCAGCATCCGTGAGGGCCATAATGCATTGGCAGTATCGAACCATTTGCCGGGGGCAGAATTCTATCTTGCATAATCTTT

Basic information

species Glycine max
transcript GLYMA15G16270.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G16270.1 (Glycine max), 3'ss of exon 14
lower sequence: AT3G16785.1 (Arabidopsis thaliana), 3'ss of exon 14
gttccgattaattttattcttttattctgtttcaacactgtaaatattgcttttgcatgaatgttagactgatttctcagttatctagGGTGGTCTTGATGATAGCGGTGCAGCATCCGTGAGGGCCATAATGCATTGGCAGTATCGAACCATTTGCCGGGGGCAGAATTCTATCTTGCATAATCTTT
|||    |    |  |    | |||||||||| || |   |   |  |||  | |||    | ||| ||  |  | |  ||     |||| ||| |||| || || ||||||||||| || || ||||||||||||||||||||||||||||| | | | || || || || || |||  ||||||||
gttagtttcggctagaaaagtgtattctgtttaaaaagatttgctcctgcaat-gca-actttttaaaccaacgtatgtgtctggcagGGAGGTATTGACGACAGTGGTGCAGCATCTGTTAGAGCCATAATGCATTGGCAGTATCGAACCATATACAGAGGACATAACTCAATATTGACTAATCTTT

upper sequence: GLYMA15G16270.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 15
gttccgattaattttattcttttattctgtttcaacactgtaaatattgcttttgcatgaatgttagactgatttctcagttatctagGGTGGTCTTGATGATAGCGGTGCAGCATCCGTGAGGGCCATAATGCATTGGCAGTATCGAACCATTTGCCGGGGGCAGAATTCTATCTTGCATAATCTTT
           |  |||||||  |||  ||| |   ||  |  | ||          ||  | |||   |  | |   | ||    |||||||| | |||||| | || || ||||| || || |||||||||||||||||||||||||| || ||||| ||  | ||||| || || || |||||||
----------gtactattcttg-attaagttccttgacatttgaaataaaagagatttgttttttatttttgtcttgaatttcaacagGGTGGTTTGGATGATGGTGGGGCGGCATCTGTAAGAGCCATAATGCATTGGCAGTATCGAACTATATGCCGAGGAAATAATTCAATATTACAAAATCTTT

upper sequence: GLYMA15G16270.1 (Glycine max), 3'ss of exon 14
lower sequence: EFJ12042 (Selaginella moellendorffii), 3'ss of exon 14
gttccgattaattttattcttttattctgtttcaacactgtaaatattgcttttgcatgaatgttagactgatttctcagttatctagGGTGGTCTTGATGATAGCGGTGCAGCATCCGTGAGGGCCATAATGCATTGGCAGTATCGAACCATTTGCCGGGGGCAGAATTCTATCTTGCATAATCTTT
                                 ||   |  |||  | | |       ||   ||| ||   |||  |  || | ||||||||| | |||||||  || ||||||||||| || ||||| || |||||||| ||| ||||||| ||||| ||  |    ||  | ||| |   |||  
-------------------------------gtaaggttccaaac-tcgttaaatggcgacatttaaacatgttttcc--ttttgtagGGTGGTGTCGATGATACAGGAGCAGCATCCGTTAGAGCCATCATTCATTGGCAATATAGAACCATATGCCGTGGAAATTCGTCGTTGTTGAAGCGTCTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacactgtaaatattgcttttgcatgaatgttagactgatttctcagttatctagGGTGGTCTTGATGATAGCGGTGCAGCATCCGTGAGGGCCATAATGCATTGGCAGTATCGAACCATTTGCCGGGGGCAGAATTCTATCTTGCATAATCTTT
                                 gactgat  putative branch site (score: 3)
                                       tttctca  CT-rich tract
       taaatattgctttt  TA-rich tract