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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgatccccccctttttgcttttgagtgttctgtttgacattcttttcaattaattactaagaggcaaatgttgtgatggttgcagCACAGATATCCTCATTCTCTTCTTGAATCAGGATCCTAATCTTCTGCAGTCTTATGTTGTTCAACAGGAGGGAATTACACTTCTTGGGCTATTG

Basic information

species Glycine max
transcript GLYMA15G15270.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G15270.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv05s0077g01200.t01 (Vitis vinifera), 3'ss of exon 15
------------------gtattgatccccccctt----tttgcttttgagtgttctgtttgacattcttttcaattaattactaagaggcaaatg-ttgtg-atggttgcagCACAGATATCCTCATTCTCTTCTTGAATCAGGATCCTAATCTTCTGCAGTCTTATGTTGTTCAACAGGAGGGAATTACACTTCTTGGGCTATTG
                   |||   ||     | |    ||    |||   |  ||||  |  | ||    |  |||   | |||| | | |     ||||  |||| ||||| ||||| ||||||||||| ||| ||||||||||||| || |||||||  ||||||||  |||  ||||| |||||| |||||||||| ||  ||
gtaatgaatgaacccagaatatctgtctttagcataaaattcagcttttcttaatctgcatttccttaccattgatttggtcctaacaagaagtcaattgtttatggatgcagGACAGACATCCTCATTCTTTTCCTGAATCAGGATCCAAACCTTCTGCGTTCTTATGTCATTCGGCAGGAAGGAATTCCACTTCTTGGACTTCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttgacattcttttcaattaattactaagaggcaaatgttgtgatggttgcagCACAGATATCCTCATTCTCTTCTTGAATCAGGATCCTAATCTTCTGCAGTCTTATGTTGTTCAACAGGAGGGAATTACACTTCTTGGGCTATTG
                 aattaat  putative branch site (score: 3)
        attcttttcaattaat  TA-rich tract