Sequence
atgc intronic sequence ATGC exonic sequencegtaacgtattccttctgttcatttaattaagcaataaagcattctactatttcccttgctctagctctagctgtagtgttataaaaattaaaatatctgaggcttggttttgctttgtgaaaaagGGTAAAGAATAAGGACAACAAAGATAAGAGAGTAGAGCTACTACAAAAGTTTGCACGCACACATTTCCCTTGCGTGAAGTACATGGAATATGCTATTCAA
Basic information
species | Glycine max |
transcript | GLYMA15G15010.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G15010.1 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os01g19450.2 (Oryza sativa), 3'ss of exon 15
gtaacgtattccttctgttcatttaattaagcaataaagcattctactatttcccttgctctagctctagctgtag---tgttataaaaattaaaatatctgaggcttggttttgctttgtgaaaa---agGGTAAAGAATAAGGACAACAAAGATAAGAGAGTAGAGCTACTACAAAAGTTTGCACGCACACATTTCCCTTGCGTGAAGTACATGGAATATGCTATTCAA
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------------------------------------gtatgttctatctgtttgcttgacatgacatttcctaagaatccttcatccagaatagatttcctcaaatttcactcgcctttcttgattattagGATCAAGAGCAGAGACAACAGAGATAAGAGAGTGCAGCTTCTACAGAAATATGCCCACACACATTTCCCTTCTGTCAAATACATGGAGTATGCTGTCCAG
upper sequence: GLYMA15G15010.1 (Glycine max), 3'ss of exon 14
lower sequence: PP1S46_63V6.4 (Physcomitrella patens), 3'ss of exon 13
gtaacgtattccttctgttcattta--attaagcaataaagcattctactatttcccttgctctagctctagctgtagtgttataaaaattaaaatatctgaggcttggttttgctttgtgaaaaagGGTAAAGAATAAGGACAACAAAGATAAGAGAGTAGAGCTACTACAAAAGTTTGCACGCACACATTTCCCTTGCGTGAAGTACATGGAATATGCTATTCAA
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--------ttactgaacttcgtttactgttgtgtgataacgtgttggtccattggaatttctgtt-------------tgttggggaaatgaaactcattgaagttctgcc---ctttgtg---cagGATCAAGAGTCGAGATAACAGAGATAAGAGAGTGGAGCTTTTGCAAAAGTACGCACGCACGCAATTCCCAAATGTGAAGTACATGGAATATGCTGTGACG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgtagtgttataaaaattaaaatatctgaggcttggttttgctttgtgaaaaagGGTAAAGAATAAGGACAACAAAGATAAGAGAGTAGAGCTACTACAAAAGTTTGCACGCACACATTTCCCTTGCGTGAAGTACATGGAATATGCTATTCAA
ttttgcttt CT-rich tract
tgttataaaaattaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaacgtattccttctgttcatttaattaagcaataaagcattctactatttcccttgctctagctctagctgtagtgttataaaaattaaaatatctgaggcttggttttgctttgtgaaaaagGGTAAAGAATAAGGACAACAAAGATAAGAGAGTAGAGCTACTACAAAAGTTTGCACGCACACATTTCCCTTGCGTGAAGTACATGGAATATGCTATTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA