1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtctttcctccttcccttcctcttactttggttgcttaatttccaggtacttaccatttatgattttgcaaacagGTCCAAAGGGAGTTTCATCTACCAGCCGGTGATTTTCCCAACGTTGAACACTTCAGAGAAGTTCTAAGTGGTTATAGCATTGACAAATTTGAGAAACTAA
species | Glycine max |
transcript | GLYMA15G11970.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CCAAGGCTCAACAAAGACTTCTTGATAATCTTGAGGAAGAATTTGCAAAG GTCCAAAGGGAGTTTCATCTACCAGCCGGTGATTTTCCCAACGTTGAACACEST: gi|208295466|gb|GE092667.1|GE092667
genomic: CCAAGGCTCAACAAAGACTTCTTGATAATCTTGAGGAAGAATTTGCAAAGgtctttcctc ... ttgcaaacagGTCCAAAGGGAGTTTCATCTACCAGCCGGTGATTTTCCCAACGTTGAACAC
EST: CCAAGGCTCAACAAAGACTTCTTGATAATCTTGAGGAAGAATTTGCAAAG GTCCAAAGGGAGTTTCATEST: gi|58023596|gb|CX710337.1|CX710337
genomic: CCAAGGCTCAACAAAGACTTCTTGATAATCTTGAGGAAGAATTTGCAAAGgtctttcctc ... ttgcaaacagGTCCAAAGGGAGTTTCAT
EST: CCAAGGCTCAACAAAGACTTCTTGATAATCTTGAGGAAGAATTTGCAAAG GTCCAAAGGGAGTTTCATCTACCAGCCGGTGATTTTCCCAACGTTGAACAC
genomic: CCAAGGCTCAACAAAGACTTCTTGATAATCTTGAGGAAGAATTTGCAAAGgtctttcctc ... ttgcaaacagGTCCAAAGGGAGTTTCATCTACCAGCCGGTGATTTTCCCAACGTTGAACAC
tcttactttggttgcttaatttccaggtacttaccatttatgattttgcaaacagGTCCAAAGGGAGTTTCATCTACCAGCCGGTGATTTTCCCAACGTTGAACACTTCAGAGAAGTTCTAAGTGGTTATAGCATTGACAAATTTGAGAAACTAA
tacttac putative branch site (score: 1)
atttatgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctttcctccttcccttcctcttactttggttgcttaatttccaggtacttaccatttatgattttgcaaacagGTCCAAAGGGAGTTTCATCTACCAGCCGGTGATTTTCCCAACGTTGAACACTTCAGAGAAGTTCTAAGTGGTTATAGCATTGACAAATTTGAGAAACTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT