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gtacaatacccgatgcttaggagcattagggatcagattaagtgaatcttaaaatatcatttgcgttttagttgcagttaccatagtttagccctcctctaaataatgattatgcgattctttttccaactaatttgatgttggggagtgtagGTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACAGAAAGAGTTTTCCAAGACCGTCAGTATCAG
species | Glycine max |
transcript | GLYMA15G10030.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAG GTGAATGCAATTCAGTTGAAGGAGACAGTAGAGGAGAACACAAGCACCACTEST: gi|19934696|gb|BQ079726.1|BQ079726
genomic: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAGgtacaatacc ... gggagtgtagGTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACA
EST: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAG GTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACAEST: gi|6725094|gb|AW309493.1|AW309493
genomic: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAGgtacaatacc ... gggagtgtagGTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACA
EST: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAG GTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACAEST: gi|18734880|gb|BM528438.1|BM528438
genomic: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAGgtacaatacc ... gggagtgtagGTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACA
EST: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAG GTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACAEST: gi|58020712|gb|CX707454.1|CX707454
genomic: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAGgtacaatacc ... gggagtgtagGTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACA
EST: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAG GTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACAEST: gi|151404598|gb|EV274412.1|EV274412
genomic: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAGgtacaatacc ... gggagtgtagGTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACA
EST: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAG GTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACAEST: gi|15812462|gb|BI784737.1|BI784737
genomic: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAGgtacaatacc ... gggagtgtagGTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACA
EST: GTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAG GTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACAEST: gi|15814238|gb|BI786513.1|BI786513
genomic: GTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAGgtacaatacc ... gggagtgtagGTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACA
EST: CTTTATCGTATAAAG GTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACAEST: gi|209700820|gb|BW661251.1|BW661251
genomic: CTTTATCGTATAAAGgtacaatacc ... gggagtgtagGTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACA
EST: CTTTATCGTATAAAG GTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACAEST: gi|6567265|gb|AW234876.1|AW234876
genomic: CTTTATCGTATAAAGgtacaatacc ... gggagtgtagGTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACA
EST: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAG GTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACAEST: gi|58020885|gb|CX707627.1|CX707627
genomic: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAGgtacaatacc ... gggagtgtagGTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACA
EST: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAG GTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACAEST: gi|9902981|gb|BE611949.1|BE611949
genomic: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAGgtacaatacc ... gggagtgtagGTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACA
EST: ACTCATTTG-TTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAG GTGAATGCAATTCAGTTGAAGGAGACAGTAGAGGAGAACACAAGCACCACTEST: gi|9902896|gb|BE611864.1|BE611864
genomic: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAGgtacaatacc ... gggagtgtagGTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACA
EST: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAG GTGAATGCAATTCAGTTGAAGGAGACAGTAGAGGAGAACACAAGCACCACTEST: gi|17401651|gb|BM178433.1|BM178433
genomic: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAGgtacaatacc ... gggagtgtagGTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACA
EST: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAG GTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACAEST: gi|58020543|gb|CX707285.1|CX707285
genomic: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAGgtacaatacc ... gggagtgtagGTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACA
EST: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAG GTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACAEST: gi|15204199|gb|BI426967.1|BI426967
genomic: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAGgtacaatacc ... gggagtgtagGTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACA
EST: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAG GTGAATGCAATTCAGTTGAAGGAGACAGTAGAGGAGAACACAAGCACCACTEST: gi|151395410|gb|EV265287.1|EV265287
genomic: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAGgtacaatacc ... gggagtgtagGTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACA
EST: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAG GTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACAEST: gi|208316606|gb|GE117894.1|GE117894
genomic: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAGgtacaatacc ... gggagtgtagGTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACA
EST: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAG GTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACAEST: gi|17400275|gb|BM177057.1|BM177057
genomic: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAGgtacaatacc ... gggagtgtagGTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACA
EST: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAG GTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACA
genomic: ACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAGgtacaatacc ... gggagtgtagGTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACA
ctaaataatgattatgcgattctttttccaactaatttgatgttggggagtgtagGTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACAGAAAGAGTTTTCCAAGACCGTCAGTATCAG
taatgattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaatacccgatgcttaggagcattagggatcagattaagtgaatcttaaaatatcatttgcgttttagttgcagttaccatagtttagccctcctctaaataatgattatgcgattctttttccaactaatttgatgttggggagtgtagGTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACAGAAAGAGTTTTCCAAGACCGTCAGTATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA