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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaaaaaatgaggtatatattacttgcaagggtgtattaaattccattttgtgattttttttcttcaagttcctgagttgtgctcttcatttttttccagGAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGTGTTCATTCTTCACCATTATCAGATCAAACTCCTACTACAAAGCTAAATT

Basic information

species Glycine max
transcript GLYMA15G01980.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120530587|gb|EH258720.1|EH258720
EST:     AACATCTTCAGCAG                         GAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGT
genomic: AACATCTTCAGCAGgtagagattt ... ttttttccagGAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGT
EST: gi|15814203|gb|BI786478.1|BI786478
EST:     ACAAGCAAGAGTTACAGGAGGCATTGATGCAAAGGGAACATCTTCAGCAG                         GAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGT
genomic: ACAAGCAAGAGTTACAGGAGGCATTGATGCAAAGGGAACATCTTCAGCAGgtagagattt ... ttttttccagGAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGT
EST: gi|21602173|gb|BQ612504.1|BQ612504
EST:     ACAAGCAAGAGTTACAGGAGGCATTGATGCAAAGGGAACATCTTCAGCAG                         GAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGT
genomic: ACAAGCAAGAGTTACAGGAGGCATTGATGCAAAGGGAACATCTTCAGCAGgtagagattt ... ttttttccagGAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGT
EST: gi|151407143|gb|EV276958.1|EV276958
EST:     ACAAGCAAGAGTTACAGGAGGCGTTGATGCAAAGGGAACATCTTCAGCAG                         GAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGGAGACTCTACGT
genomic: ACAAGCAAGAGTTACAGGAGGCATTGATGCAAAGGGAACATCTTCAGCAGgtagagattt ... ttttttccagGAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGT
EST: gi|17400350|gb|BM177132.1|BM177132
EST:     ACAAGCAAGAGTTACAGGAGGCATTGATGCAAAGGGAACATCTTCAGCAG                         GAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGT
genomic: ACAAGCAAGAGTTACAGGAGGCATTGATGCAAAGGGAACATCTTCAGCAGgtagagattt ... ttttttccagGAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGT
EST: gi|120530590|gb|EH258723.1|EH258723
EST:     AACATCTTCAGCAG                         GAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGT
genomic: AACATCTTCAGCAGgtagagattt ... ttttttccagGAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGT
EST: gi|9258601|gb|BE346748.1|BE346748
EST:     ACAAGCAAGAGTTACAGGAGGCATTGATGCAAAGGGAACATCTTCAGCAG                         GAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGT
genomic: ACAAGCAAGAGTTACAGGAGGCATTGATGCAAAGGGAACATCTTCAGCAGgtagagattt ... ttttttccagGAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgtgattttttttcttcaagttcctgagttgtgctcttcatttttttccagGAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGTGTTCATTCTTCACCATTATCAGATCAAACTCCTACTACAAAGCTAAATT
                                ttgtgctcttcatttt  CT-rich tract
        attttttttcttcaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taaaaaaatgaggtatatattacttgcaagggtgtattaaattccattttgtgattttttttcttcaagttcctgagttgtgctcttcatttttttccagGAGATAGAAAAAGAAAAGGCTGCTCGATCAGAGCTGGAGAAGACTCTACGTGTTCATTCTTCACCATTATCAGATCAAACTCCTACTACAAAGCTAAATT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA