1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ataaattatggagctcataatttgatgtgatgtattcttttgatagctaaaatcagtaaaaaatgatattggaattttccgtacctttatgttcttgtagGTAGAAATTACTGATGTACCTGCCGATACGAAGGACAAAGACGAGATTCTTGAGAGTGAATTCTTTGACACTAGGCAGGCATTTCTGAGTCTCTGCCAGG
species | Glycine max |
transcript | GLYMA15G00250.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AGAGAGAACAGCATCCTATTAACCAGAGGGAAAAACACACCCTTTATCCT GTAGAAATTACTGATGTACCTGCCGATGCGAAGGACAAAGACGAGATTEST: gi|254344017|gb|GR850927.1|GR850927
genomic: AGAGAGAACAGCATCCTATTAACCAGAGGGAAAAACACACCCTTTATCCTgtgagtaagc ... gttcttgtagGTAGAAATTACTGATGTACCTGCCGATACGAAGGACAAAGACGAGATT
EST: AGAGAGAACAGCATCCTATTAACCAGAGGGAAAAACACACCCTTTATCCT GTAGAAATTACTGATGTACCTGCCGATACGAAGGACAAAGACGAGATTCTTEST: gi|7147178|gb|AW509100.1|AW509100
genomic: AGAGAGAACAGCATCCTATTAACCAGAGGGAAAAACACACCCTTTATCCTgtgagtaagc ... gttcttgtagGTAGAAATTACTGATGTACCTGCCGATACGAAGGACAAAGACGAGATTCTT
EST: AGAGAGAACAGCATCCTATTAACCAGAGGGAAAAACACACCCTTTATCCT GTAGAAATTACTGATGTACCTGCCGATACGAAGGACAAAGACGAGATTCTT
genomic: AGAGAGAACAGCATCCTATTAACCAGAGGGAAAAACACACCCTTTATCCTgtgagtaagc ... gttcttgtagGTAGAAATTACTGATGTACCTGCCGATACGAAGGACAAAGACGAGATTCTT
gctaaaatcagtaaaaaatgatattggaattttccgtacctttatgttcttgtagGTAGAAATTACTGATGTACCTGCCGATACGAAGGACAAAGACGAGATTCTTGAGAGTGAATTCTTTGACACTAGGCAGGCATTTCTGAGTCTCTGCCAGG
agctaaa putative branch site (score: 3)
tgttctt putative PPT
taaaaaatgatattgg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataaattatggagctcataatttgatgtgatgtattcttttgatagctaaaatcagtaaaaaatgatattggaattttccgtacctttatgttcttgtagGTAGAAATTACTGATGTACCTGCCGATACGAAGGACAAAGACGAGATTCTTGAGAGTGAATTCTTTGACACTAGGCAGGCATTTCTGAGTCTCTGCCAGG
- - - - - - - - - - - tgatgtg
- - - - - - - - - - - - - - - tgtattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat