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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattctagattattagaacattttctgaggcatctctttcctcaactcaaatggggtttatctgttaacacaatctgctttacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTTGAAAGCGGCTTCCTGCTTGATGATCCCAAGGATTTTGCTTCCCGGATTT

Basic information

species Glycine max
transcript GLYMA14G40320.3
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G40320.4 (Glycine max), 3'ss of exon 14
lower sequence: AT4G24190.1 (Arabidopsis thaliana), 3'ss of exon 14
gtacattctagattattagaacattttctgaggcatctctttcctcaactcaaatggggtttatctgttaacacaatctgctttacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTTGAAAGCGGCTTCCTGCTTGATGATCCCAAGGATTTTGCTTCCCGGATTT
         | |  |  | || |       |  | | | ||| || |      ||  |    ||    ||||| |      | |     |||||||||| |||||||| | ||||||||||| ||||||||||| ||  |  | || || || ||| | ||    || || || || |||||| |||| ||||
------gtaaaacaaacataagacccatcaattcttttttttacttactgtctattagagaaataaactaacataccaaattct----ctcagGATGAGAGTGTGAAGGAAACAGCACAGCTCATGTACCAGACAGCTTTGATCGAGAGTGGATTCATACTCACCGACCCAAAAGACTTTGCTGCCCGTATTT

upper sequence: GLYMA14G40320.4 (Glycine max), 3'ss of exon 14
lower sequence: Vv18s0001g14500.t01 (Vitis vinifera), 3'ss of exon 14
gtacattctagattattaga-acattttctgaggcatctctttcctcaactcaaatggggtttatctgttaac----acaatctgctttactt---ttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTTGAAAGCGGCTTCCTGCTTGATGATCCCAAGGATTTTGCTTCCCGGATTT
 |  ||   ||| |  || |  ||||   | |   | ||  ||   ||    | ||    ||  |||| ||      || || | |||  |||   ||||||||||||| || ||| | ||||||||||| |||||||| || |||||| | || || || ||||||||   ||| |||||| ||||||| ||    || |
-tgtatagcagagtcctatatgcattacttaaaaaaactaattaaacatgcaatatatctttagtctgctactcacaacgatttacttgccttcccttcagGATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATGGAGAGTGGTTTCCTGCTCAGTGACCCCAAGCATTTTGCCTCTAATATCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17963785|gb|BM270530.1|BM270530
EST:     GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAG                         GATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
genomic: GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
EST: gi|254328196|gb|GR835161.1|GR835161
EST:     GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAG                         GATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
genomic: GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
EST: gi|213592973|gb|DB983373.1|DB983373
EST:     CAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAG                         GATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
genomic: CAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
EST: gi|42722966|gb|CK768865.1|CK768865
EST:     GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAG                         GATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
genomic: GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
EST: gi|192307635|gb|FG999674.1|FG999674
EST:     GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAG                         GATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
genomic: GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
EST: gi|151398470|gb|EV268341.1|EV268341
EST:     GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAG                         GATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
genomic: GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
EST: gi|7234397|gb|AW569735.1|AW569735
EST:     GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAG                         GATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
genomic: GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
EST: gi|7795115|gb|AW780512.1|AW780512
EST:     GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAG                         GATGATGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
genomic: GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
EST: gi|7233245|gb|AW568593.1|AW568593
EST:     GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAG                         GATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
genomic: GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
EST: gi|192307636|gb|FG999675.1|FG999675
EST:     GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAG                         GATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
genomic: GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
EST: gi|6201082|gb|AW153182.1|AW153182
EST:     GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTTAAGAACCCTGAG                         GATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
genomic: GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
EST: gi|33390550|gb|CA853745.1|CA853745
EST:     GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAG                         GATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
genomic: GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
EST: gi|4306807|gb|AI443957.1|AI443957
EST:     GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAG                         GATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
genomic: GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
EST: gi|7795342|gb|AW780801.1|AW780801
EST:     GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAN                         GATGANGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
genomic: GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
EST: gi|298164866|gb|HO010863.1|HO010863
EST:     GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAG                         GATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
genomic: GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
EST: gi|5760776|gb|AI966139.1|AI966139
EST:     GGCACCCTATTATCAAGGAGCTCCGTTAGAGAGTAGTAAAGAACCCTGAG                         GATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
genomic: GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
EST: gi|298185056|gb|HO030269.1|HO030269
EST:     GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAG                         GATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
genomic: GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
EST: gi|16282387|gb|BI944989.1|BI944989
EST:     GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAG                         GATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
genomic: GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
EST: gi|4299465|gb|AI442908.1|AI442908
EST:     GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAG                         GATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
genomic: GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
EST: gi|13788894|gb|BG651485.1|BG651485
EST:     GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAG                         GATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
genomic: GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
EST: gi|254343167|gb|GR859329.1|GR859329
EST:     GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAG                         GATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
genomic: GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
EST: gi|37995336|gb|CF806925.1|CF806925
EST:     GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAG                         GATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCA
genomic: GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCA
EST: gi|42723040|gb|CK768939.1|CK768939
EST:     GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAG                         GATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
genomic: GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
EST: gi|23726943|gb|BU761483.1|BU761483
EST:     GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAG                         GATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
genomic: GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
EST: gi|13788861|gb|BG651452.1|BG651452
EST:     GTAGTAAAGAACCCTGAG                         GATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
genomic: GTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
EST: gi|192301694|gb|FG997622.1|FG997622
EST:     GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTGGTAAAGAACCCTGAG                         GATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
genomic: GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
EST: gi|21602387|gb|BQ612718.1|BQ612718
EST:     GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAG                         GATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
genomic: GGCACCCTATTATCAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
EST: gi|209716278|gb|BW657581.1|BW657581
EST:     CAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAG                         GATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT
genomic: CAAGGAGCTCCGAGAGAGAGTAGTAAAGAACCCTGAGgtacattcta ... tacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcctcaactcaaatggggtttatctgttaacacaatctgctttacttttcagGATGAGGGTGTGAAGCATACAGCACAGCTGATGTACCAGACTGCACTCTTTGAAAGCGGCTTCCTGCTTGATGATCCCAAGGATTTTGCTTCCCGGATTT
                           tgttaac  putative branch site (score: 2)
                                      tctgctttacttttc  putative PPT
                                           tttactttt  TA-rich tract