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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgataaatgatgctttcaatttatgggaacagataaaaagatgtattccctcccccgatactgtcttgaacacgttaccttattggcatgtgccttatttactactttggttttgcagCATTGGATCAATTTTGGGTTGCAGAGCTGAAATTTTGCAACTTGATGTCACAGACATCAAAATGGAGTGTTTCCTGACATAATCCGGTTTTAAATCTGGT

Basic information

species Glycine max
transcript GLYMA14G39890.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51343704|gb|CO984437.1|CO984437
EST:     CTTGGACGCACCCATCCTAG                         CATTGGATCAATTTTGGGTTGCAGAGCTGAAATTTTGCAACTTGATGTCAC
genomic: CTTGGACGCACCCATCCTAGgtatgataaa ... ggttttgcagCATTGGATCAATTTTGGGTTGCAGAGCTGAAATTTTGCAACTTGATGTCAC
EST: gi|209721756|gb|BW682597.1|BW682597
EST:     TGGACGCACCCATCCTAG                         CATTGGATCAATTTTGGGTTGCAGAGCTGAAATTTTGCAACTTGATGTCAC
genomic: TGGACGCACCCATCCTAGgtatgataaa ... ggttttgcagCATTGGATCAATTTTGGGTTGCAGAGCTGAAATTTTGCAACTTGATGTCAC
EST: gi|51342518|gb|CO983503.1|CO983503
EST:     ACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCATCCTAG                         CATTGGATCAATTTTGGGTTGCAGAGCTGAAATTTTGCAACTTGATGTCAC
genomic: ACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCATCCTAGgtatgataaa ... ggttttgcagCATTGGATCAATTTTGGGTTGCAGAGCTGAAATTTTGCAACTTGATGTCAC
EST: gi|58017398|gb|CX704140.1|CX704140
EST:     ACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCATCCTAG                         CATTGGATCAATTTTGGGTTGCAGAGCTGAAATTTTGCAACTTGATGTCAC
genomic: ACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCATCCTAGgtatgataaa ... ggttttgcagCATTGGATCAATTTTGGGTTGCAGAGCTGAAATTTTGCAACTTGATGTCAC
EST: gi|208221094|gb|GE020764.1|GE020764
EST:     ACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCATCCTAG                         CATTGGATCAATTTTGGGTTGCAGAGCTGAAATTTTGCAACTTGATGTCAC
genomic: ACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCATCCTAGgtatgataaa ... ggttttgcagCATTGGATCAATTTTGGGTTGCAGAGCTGAAATTTTGCAACTTGATGTCAC
EST: gi|58017203|gb|CX703945.1|CX703945
EST:     ACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCATCCTAG                         CATTGGATCAATTTTGGGTTGCAGAGCTGAAATTTTGCAACTTGATGTCAC
genomic: ACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCATCCTAGgtatgataaa ... ggttttgcagCATTGGATCAATTTTGGGTTGCAGAGCTGAAATTTTGCAACTTGATGTCAC
EST: gi|163922935|gb|EH039556.1|EH039556
EST:     ACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCATCCTAG                         CATTGGATCAATTTTGGGTTGCAGAGCTGAAATTTTGCAACTTGATGTCAC
genomic: ACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCATCCTAGgtatgataaa ... ggttttgcagCATTGGATCAATTTTGGGTTGCAGAGCTGAAATTTTGCAACTTGATGTCAC
EST: gi|51342063|gb|CO983330.1|CO983330
EST:     ACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCATCCTAG                         CATTGGATCAATTTTGGGTTGCAGAGCTGAAATTTTGCAACTTGATGTCAC
genomic: ACCTACATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCATCCTAGgtatgataaa ... ggttttgcagCATTGGATCAATTTTGGGTTGCAGAGCTGAAATTTTGCAACTTGATGTCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgaacacgttaccttattggcatgtgccttatttactactttggttttgcagCATTGGATCAATTTTGGGTTGCAGAGCTGAAATTTTGCAACTTGATGTCACAGACATCAAAATGGAGTGTTTCCTGACATAATCCGGTTTTAAATCTGGT
                               ttatttactacttt  TA-rich tract