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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgagagaaacctctgcagttcatacaatttttttatttgaacctgaaccatttctttgtagctccccttattgtctgcgtccttgttatatctgtggtaactgtttttgttttgaacagtatatgtacattaagttgacaatgtctgctgacagttaccattttcattttgatttgcagGGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAG

Basic information

species Glycine max
transcript GLYMA14G06340.2
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 3'ss of exon 14
gtgtgagagaaacctctgcagttcatacaatttttttatttgaacctgaaccatttctttgtagctccccttattgtctgcgtccttgttatatctgtggtaactgtttttgttttgaacagtatatg--tacattaagttgacaatgtctgctgacagttaccattttcattttgatttgcagGGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAG
                                                                       |||||  |  |   || |     ||  ||| |     | || ||||  | ||   |   |   ||   ||  |||  |    |   | ||||  | |   | ||  ||  ||||| ||||| || |||||  | |||||||| ||||||||||| ||  | |||||||||||||| || |||||||||||||| ||||||
-----------------------------------------------------------------gtaatgtattggttaagctattttggg--ctagggtgaaatactctgctttgttctgtgggttgttgatttttatttgcaaaattaatt---atttactgtatatctctt--ttaccagGGAGCTGTCAACTTTGCGCTCATGATGTCACAAATGGAGGGGGGCTGTCCAGTTGATTACAATACTATAACTGATCTCTTCCTTCAG

upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 3'ss of exon 14
gtgtgagagaaacctctgcagttcatacaatttttttatttgaacctgaaccatttctttgtagctccccttattgtctgcgtccttgttatatctgtggtaactgtttttgttttgaacagtatatg--tacattaagttgacaatgtctgctgacagttaccattttcattttgatttgcagGGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAG
                                                                      ||||||  |  |   || || |  ||  ||| |    || || ||||  | ||   |   |   ||   ||  |||  | |  |   | ||||  | |   | ||  ||  ||||| ||||| || |||||  | |||||||| ||||||||||| ||  | |||||||||||||| || |||||||||||||| ||||||
-----------------------------------------------------------------gtaatttattggttaagctatt-ttgtg-ctagggtgaaatattctgctttgttctgtgggttgttgatttttatttgcaaaatttatt---atttactgtatatctctt--ttaccagGGAGCTGTCAACTTTGCGCTCATGATGTCACAAATGGAGGGGGGCTGTCCAGTTGATTACAATACTATAACTGATCTCTTCCTTCAG

upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 14
lower sequence: GRMZM2G057576_T02 (Zea mays), 3'ss of exon 12
gtgtgagagaaacctctgcagttcatacaatttttttatttgaacctgaaccatttctttgtagctccccttattgtctgcgtccttgttatatctgtggtaactgtttttgttttgaacagtatatgtacattaagttgacaatgtctgctgacagttaccattttcattttgatttgcagGGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAG
                                                            |||  |    ||||| |  ||   ||||   |   ||||     |   ||||||| | |||   | | |   |||  |    |||   ||||  || |  | ||||  || ||||    ||||| ||||| || |||||||| |||||||| ||||||||||||||| | ||||| || |||||||| || ||||||||||| ||||||
------------------------------------------------------------gtaattgg--ttattttaagcaaacttgggcttaatgtgaggtattcatttgtttggtaca---tgtttcttttatctcagaaatccttgctt-cattgtcaatttgtatcttgac---cagGGAGCTGTCAACTTTGCATTGATGATGTCACAAATGGAGGGAGGTTGTCCAGTAGACTACAACACTATCACTGATCTCTTCCTTCAG

upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 14
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 3'ss of exon 14
gtgtgagagaaacctctgcagttcatacaatttttttatttgaacctgaaccatttctttgtagctccccttattgtctgcgtccttgttatatctgtggtaactgtttttgttttgaacagtatatgtacattaagttgacaatgtctgctgacagttaccattttcattttgat--ttgcagGGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAG
                                                                           | ||||     |||| | | |   | ||||       |||||  | ||| | |  || || ||      | |||||| |   |   | ||||  |  || |  |||||||| || || |||||||| ||||||||||| |||||||| |||||| | |||||||| |||||||| || |||||||| || ||||||
---------------------------------------------------------------------------gcctgc-----tgttgtttatcaagcaactaagc---ttttgccctgtaaaagatcaata-gtcttttttttctgctaattatcttcttttttttcctgctaattgcagGGAGCAGTAAATTTTGCTTTAATGATGTCCCAAATGGAAGGAGGTTGTCCAGTTGACTACAACACTATCACTGATCTTTTCCTTCAG

upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 14
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 14
--gtgtgagagaaacctctgcagttcatacaatttttttatttgaac---ctgaaccatttctttgtagct----ccccttattgtctgcgtccttgttatatctgtgg-taact-gtttttgttttgaacagtatatgtacattaagttgacaatgtctgctgacagttaccattttcattttgatttgcagGGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAG
    ||| |    ||   ||    |   |  ||  |    | ||||    ||  ||    | | ||| ||     | |   |     |  |       ||  |   ||  ||| | |   |  | ||  | || ||    | ||    ||  ||  || |    |    ||   |||| ||||| |||||||||| || || ||||||||||||||||||||||||||||| ||||||   |||||||| |||||||| || |||||||| |||||||||
gttagtgtggtgcactcttgatacttgcaacatactaaactatgaaaggactttactgaatatatgtggcgtaagcactggaagagttatgaatcaactaacttgttgaataatttgacctgatgttatatagaatgaaga-atctttttcccaccgtattaatatcaatagtcttttaatttttatttgcagGGAGCAGTAAATTTTGCATTAATGATGTCTCAAATGGAAGGAGGTTCTCCAGTTGACTACAACACCATCACTGATCTTTTTCTTCAG

upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 14
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 14
gtgtgagagaaacctctgcagttcatacaatttttttatttgaacctgaaccatttctttgtagctccccttattgtctgcgtccttgttatatctgtggtaactgtttttgttttgaacagtatatgtacattaagttgacaatgtctgc-tgacagttaccattttcattttgatttgcagGGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAG
                                                         | || |   |   || | || |  |    | ||   | | ||  || ||||   |    || |||  ||  |     || | || ||  | | | |||  |    |||||   |||||  |||||||| ||||| ||||||||  |||||||||||||||||||||||||| | ||  ||||||  || || |||||||||||||||||||||
--------------------------------------------------------gtatgcaagcctttttctagtgtttgcagattttccttttatga-aattgttccagaaaggatcagcttaaattt-caaattggataaaattttcctgagtggaggcatttat-ttttgggttgcagGGAGCTGTAAATTTTGCGCTAATGATGTCTCAAATGGAGGGAGGTTGTCCCATTGATTTTAATACGATAACTGATCTCTTTCTTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacattaagttgacaatgtctgctgacagttaccattttcattttgatttgcagGGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAG
                                    ttttcatttt  CT-rich tract
                                   attttcattttgattt  TA-rich tract