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...gaatttgaacaatcttagctgtaatcttatatatacactagaggaactttatgtgcttactaatgttctgggaatcctatcttaaatcgatattttacagGAAATGCAATACAAGGGACGAGATTATTGACGACTTGGCTATTCGTATTCTTGTTGGCAAGTCAAATCCTTGCTTGAAAAGAATAAACTAAGTGGTTGTC
species | Glycine max |
transcript | GLYMA13G42230.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTACTTGCCT GAAATGCAATACAAGGGACGAGATTATTGACGACTTGGCTATTCGTATTCTEST: gi|21887595|gb|BQ740808.1|BQ740808
genomic: AGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTACTTGCCTgtaagaactc ... tattttacagGAAATGCAATACAAGGGACGAGATTATTGACGACTTGGCTATTCGTATTCT
EST: AGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTACTTGCCT GAAATGCAATACAAGGGACGAGATTATTGACGACTTGGCTATTCGTATTCTEST: gi|24136028|gb|BU926538.1|BU926538
genomic: AGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTACTTGCCTgtaagaactc ... tattttacagGAAATGCAATACAAGGGACGAGATTATTGACGACTTGGCTATTCGTATTCT
EST: AGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTACTTGCCT GAAATGCAATACAAGGGACGAGATTATTGACGACTTGGCTATTCGTATTCTEST: gi|22930642|gb|BU547789.1|BU547789
genomic: AGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTACTTGCCTgtaagaactc ... tattttacagGAAATGCAATACAAGGGACGAGATTATTGACGACTTGGCTATTCGTATTCT
EST: AGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTACTTGCCT GAAATGCAATACAAGGGACGAGATTATTGACGACNNNGCTATTCGTATTCTEST: gi|9205412|gb|BE331636.1|BE331636
genomic: AGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTACTTGCCTgtaagaactc ... tattttacagGAAATGCAATACAAGGGACGAGATTATTGACGACTTGGCTATTCGTATTCT
EST: AGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTACTTGCCT GAAATGCAATACAAGGGACGAGATTATTGACGACTTGGCTATTCGTATTCTEST: gi|14205753|gb|BG839431.1|BG839431
genomic: AGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTACTTGCCTgtaagaactc ... tattttacagGAAATGCAATACAAGGGACGAGATTATTGACGACTTGGCTATTCGTATTCT
EST: AGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTACTTGCCT GAAATGCAATACAAGGGACGAGATTATTGACGACTTGGCTATTCGTATTCT
genomic: AGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTACTTGCCTgtaagaactc ... tattttacagGAAATGCAATACAAGGGACGAGATTATTGACGACTTGGCTATTCGTATTCT
actttatgtgcttactaatgttctgggaatcctatcttaaatcgatattttacagGAAATGCAATACAAGGGACGAGATTATTGACGACTTGGCTATTCGTATTCTTGTTGGCAAGTCAAATCCTTGCTTGAAAAGAATAAACTAAGTGGTTGTC
tactaat putative branch site (score: 1)
ttaaatcgatatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatttgaacaatcttagctgtaatcttatatatacactagaggaactttatgtgcttactaatgttctgggaatcctatcttaaatcgatattttacagGAAATGCAATACAAGGGACGAGATTATTGACGACTTGGCTATTCGTATTCTTGTTGGCAAGTCAAATCCTTGCTTGAAAAGAATAAACTAAGTGGTTGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA