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gtaagacttcttttgatttctttctactcgaaatagcattattgatatcggaagacaatattgaactgcaggccgggcaagtgtatgtaatccatgctaataatgccctattgaatcggacgtgtttttattcgttttttttttcctgcagCTGTAGGCTTGGTGAATGCAGGATTATTTTATGTGAAGCAGGTGCCAAGCACAAGTTGCAAAAATTGCAGCTTAATTTCCCGAG
species | Glycine max |
transcript | GLYMA13G41490.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ACCAGCAACGGAGAAGTGTTTCCTGGGTATGATACTCTCCTGCAAATTGG CTGTAGGCTTGGTGAATGCAGGATTATTTTATGTGAAGCAGGTGCCAAGCAEST: gi|57575677|gb|CX548652.1|CX548652
genomic: ACCAGCAACGGAGAAGTGTTTCCTGGGTATGATACTCTCCTGCAAATTGGgtaagacttc ... tttcctgcagCTGTAGGCTTGGTGAATGCAGGATTATTTTATGTGAAGCAGGTGCCAAGCA
EST: ACCAGCAACGGAGAAGTGTTTCCTGGGTATGATACTCTCCTGCAAATTGG CTGTAGGCTTGGTGAATGCAGGATTATTTTATGTGAAGCAGGTGCCAAGCAEST: gi|57575512|gb|CX548487.1|CX548487
genomic: ACCAGCAACGGAGAAGTGTTTCCTGGGTATGATACTCTCCTGCAAATTGGgtaagacttc ... tttcctgcagCTGTAGGCTTGGTGAATGCAGGATTATTTTATGTGAAGCAGGTGCCAAGCA
EST: ACCAGCAACGGAGAAGTGTTTCCTGGGTATGATACTCTCCTGCAAATTGG CTGTAGGCTTGGTGAATGCAGGATTATTTTATGTGAAGCAGGTGCCAAGCAEST: gi|14205384|gb|BG839062.1|BG839062
genomic: ACCAGCAACGGAGAAGTGTTTCCTGGGTATGATACTCTCCTGCAAATTGGgtaagacttc ... tttcctgcagCTGTAGGCTTGGTGAATGCAGGATTATTTTATGTGAAGCAGGTGCCAAGCA
EST: KCCAGCAACGGAGAAGTGTTTCCTGGGTATGATACTCRCCTGCAAATTGG CTGTAGGCTTGGTGAATGCAGGATTATTTTATGTGAAGCAGGTGCCAAGCA
genomic: ACCAGCAACGGAGAAGTGTTTCCTGGGTATGATACTCTCCTGCAAATTGGgtaagacttc ... tttcctgcagCTGTAGGCTTGGTGAATGCAGGATTATTTTATGTGAAGCAGGTGCCAAGCA
ctaataatgccctattgaatcggacgtgtttttattcgttttttttttcctgcagCTGTAGGCTTGGTGAATGCAGGATTATTTTATGTGAAGCAGGTGCCAAGCACAAGTTGCAAAAATTGCAGCTTAATTTCCCGAG
tgctaat putative branch site (score: 2)
cgtgtttttattcgtt putative PPT
tgtttttattcgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacttcttttgatttctttctactcgaaatagcattattgatatcggaagacaatattgaactgcaggccgggcaagtgtatgtaatccatgctaataatgccctattgaatcggacgtgtttttattcgttttttttttcctgcagCTGTAGGCTTGGTGAATGCAGGATTATTTTATGTGAAGCAGGTGCCAAGCACAAGTTGCAAAAATTGCAGCTTAATTTCCCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT