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...tatgcatttatgtggagttagcgaatgcaagaaaagttatattagttatatacttgtattgcggtctgatattttgccccctactacaataccctttcagGTCCGAGCCAGATGCAGAAGTGAATGGGCCCAGTTTCAACTTCGCGTAACCAATGCTGACAAGTCTTATCTTGAAGGACTTAAACGTAATGGGAAGGGTT
species | Glycine max |
transcript | GLYMA13G39990.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GGAGAGTCTGACAAAGGAAAAGGGCCAAGGGATTCG GTCCGAGCCAGATGCAGAAGTGAATGGGCCCAGTTTCAACTTCGCGTAACCEST: gi|209728921|gb|BW654988.1|BW654988
genomic: GGAGAGTCTGACAAAGGAAAAGGGCCAAGGGATTCGgtatgtatac ... accctttcagGTCCGAGCCAGATGCAGAAGTGAATGGGCCCAGTTTCAACTTCGCGTAACC
EST: GGAGAGTCTGACAAAGGAAAAGGGCCAAGGGATTCG GTCCGAGCCAGATGCAGAAGTGAATGGGCCCAGTTTCAACTTCGCGTAACCEST: gi|20449491|gb|BQ253615.1|BQ253615
genomic: GGAGAGTCTGACAAAGGAAAAGGGCCAAGGGATTCGgtatgtatac ... accctttcagGTCCGAGCCAGATGCAGAAGTGAATGGGCCCAGTTTCAACTTCGCGTAACC
EST: GGAGAGTCTGACAAAGGAAAAGGGCCAAGGGATTCG GTCCGAGCCAGATGCAGAAGTGAATGGGCCCAGTTTCAACTTCGCGTAACCEST: gi|12691502|gb|BG157838.1|BG157838
genomic: GGAGAGTCTGACAAAGGAAAAGGGCCAAGGGATTCGgtatgtatac ... accctttcagGTCCGAGCCAGATGCAGAAGTGAATGGGCCCAGTTTCAACTTCGCGTAACC
EST: GGAGAGTCTGACAAAGGAAAAGGGCCAAGGGATTCT GTCCGAGCCAGATGCAGAAGTGAATGGGCCCAGTTTCAACTTCGCGTAACCEST: gi|10233381|gb|BE802269.1|BE802269
genomic: GGAGAGTCTGACAAAGGAAAAGGGCCAAGGGATTCGgtatgtatac ... accctttcagGTCCGAGCCAGATGCAGAAGTGAATGGGCCCAGTTTCAACTTCGCGTAACC
EST: GGAGAGTCTGACAAAGGAAAAGGGCCAAGGGATTCG GTCCGAGCCAGATGCAGAAGTGAATGGGCCCAGTTTCAACTTCGCGTAACCEST: gi|10234562|gb|BE803450.1|BE803450
genomic: GGAGAGTCTGACAAAGGAAAAGGGCCAAGGGATTCGgtatgtatac ... accctttcagGTCCGAGCCAGATGCAGAAGTGAATGGGCCCAGTTTCAACTTCGCGTAACC
EST: GGAGAGTCTGACAAAGGAAAAGGGCCAAGGGATTCG GTCCGAGCCAGATGCAGAAGTGAATGGGCCCAGTTTCAACTTCGCGTAACC
genomic: GGAGAGTCTGACAAAGGAAAAGGGCCAAGGGATTCGgtatgtatac ... accctttcagGTCCGAGCCAGATGCAGAAGTGAATGGGCCCAGTTTCAACTTCGCGTAACC
ttatatacttgtattgcggtctgatattttgccccctactacaataccctttcagGTCCGAGCCAGATGCAGAAGTGAATGGGCCCAGTTTCAACTTCGCGTAACCAATGCTGACAAGTCTTATCTTGAAGGACTTAAACGTAATGGGAAGGGTT
gtctgat putative branch site (score: 4)
taccctttc putative PPT
tgatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgcatttatgtggagttagcgaatgcaagaaaagttatattagttatatacttgtattgcggtctgatattttgccccctactacaataccctttcagGTCCGAGCCAGATGCAGAAGTGAATGGGCCCAGTTTCAACTTCGCGTAACCAATGCTGACAAGTCTTATCTTGAAGGACTTAAACGTAATGGGAAGGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- tgcattt
- - - - - tgtggag
- - - - - - - - - - - gaatgca