1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tttttgttgctttgtttatcccggcattttggttttactcatcttctggcattttttaagctctggcagtatctaaaataatttgttatctctattttagGTCGAAATAGATGGCAAGATCTTTGGTAAAGGCATTGGATTAACATGGGATGAGGCTAAAATGCAG
species | Glycine max |
transcript | GLYMA13G25010.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CAACAAATTCAGTTCAAAAAGATGAAGTACATGCACAG GTCGAAATAGATGGCAAGATCTTTGGTAAAGGCATTGGATTAACATGGGATEST: gi|254336064|gb|GR841389.1|GR841389
genomic: CAACAAATTCAGTTCAAAAAGATGAAGTACATGCACAGgtttgtaata ... tctattttagGTCGAAATAGATGGCAAGATCTTTGGTAAAGGCATTGGATTAACATGGGAT
EST: CTGCTCCAGTGTCAACAAATTCAGTTCAAAAAGATGAAGTACATGCACAG GTCGAAATAGATGGCAAGATCTTTGGTAAAGGCATTGGATTAACATGGGATEST: gi|193717591|gb|FK652905.1|FK652905
genomic: CTGCTCCAGTGTCAACAAATTCAGTTCAAAAAGATGAAGTACATGCACAGgtttgtaata ... tctattttagGTCGAAATAGATGGCAAGATCTTTGGTAAAGGCATTGGATTAACATGGGAT
EST: AACAAATTCAGTTCAAAAAGAATGAAGTACATGCACAG GTCGAAATAGATGGCAAGATCTTTGGTAAAGGCATTGGATTAACATGGGATEST: gi|193695699|gb|FK633905.1|FK633905
genomic: AACAAATTCAGTTCAAAAAG-ATGAAGTACATGCACAGgtttgtaata ... tctattttagGTCGAAATAGATGGCAAGATCTTTGGTAAAGGCATTGGATTAACATGGGAT
EST: AACAAATTCAGTTCAAAAAGATGAAGTACATGCACAG GTCGAAATAGATGGCAAGATCTTTGGTAAAGGCATTGGATTAACATGGGATEST: gi|193669727|gb|FK614105.1|FK614105
genomic: AACAAATTCAGTTCAAAAAGATGAAGTACATGCACAGgtttgtaata ... tctattttagGTCGAAATAGATGGCAAGATCTTTGGTAAAGGCATTGGATTAACATGGGAT
EST: AACAAATTCAGTTCAAAAAGATGAAGTACATGCACAG GTCGAAATAGATGGCAAGATCTTTGGTAAAGGCATTGGATTAACATGGGAT
genomic: AACAAATTCAGTTCAAAAAGATGAAGTACATGCACAGgtttgtaata ... tctattttagGTCGAAATAGATGGCAAGATCTTTGGTAAAGGCATTGGATTAACATGGGAT
ctggcattttttaagctctggcagtatctaaaataatttgttatctctattttagGTCGAAATAGATGGCAAGATCTTTGGTAAAGGCATTGGATTAACATGGGATGAGGCTAAAATGCAG
atctaaa putative branch site (score: 3)
tctctatttt putative PPT
tatctaaaataatttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttgttgctttgtttatcccggcattttggttttactcatcttctggcattttttaagctctggcagtatctaaaataatttgttatctctattttagGTCGAAATAGATGGCAAGATCTTTGGTAAAGGCATTGGATTAACATGGGATGAGGCTAAAATGCAG
- - tgttgct
- - - - - - - - - -cccggca
- - - - - - - - - - - - - - - - - - - - -tcttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa