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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcagatgcatctacctttatgtattccacttcaatattttgtcataaaattttattgatattggtttactgcagTGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCCATTGCTCAAACCCCCTACACCTCAACCTGGTCGTCCAAGCATGCCATTA

Basic information

species Glycine max
transcript GLYMA13G21480.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209708993|gb|BW653507.1|BW653507
EST:     CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTA                         TGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
genomic: CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTAgtgagttcag ... tttactgcagTGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
EST: gi|21888649|gb|BQ741862.1|BQ741862
EST:     CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTA                         TGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
genomic: CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTAgtgagttcag ... tttactgcagTGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
EST: gi|51335181|gb|CO979047.1|CO979047
EST:     CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTA                         TGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
genomic: CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTAgtgagttcag ... tttactgcagTGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
EST: gi|51344716|gb|CO985449.1|CO985449
EST:     CATGATGTGAATCCCCAAGTAGTTGCGCTAATTGAGGCTTGCTGGGCCTA                         TGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
genomic: CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTAgtgagttcag ... tttactgcagTGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
EST: gi|7029568|gb|AW459409.1|AW459409
EST:     CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTA                         TGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
genomic: CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTAgtgagttcag ... tttactgcagTGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
EST: gi|15204014|gb|BI426782.1|BI426782
EST:     CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTA                         TGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
genomic: CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTAgtgagttcag ... tttactgcagTGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
EST: gi|254346794|gb|GR856516.1|GR856516
EST:     CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTA                         TGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
genomic: CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTAgtgagttcag ... tttactgcagTGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
EST: gi|209717222|gb|BW657691.1|BW657691
EST:     CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTA                         TGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
genomic: CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTAgtgagttcag ... tttactgcagTGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
EST: gi|254314006|gb|GR831635.1|GR831635
EST:     CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTA                         TGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC
genomic: CATGATGTGAATCCCCAAGTAGCTGCGCTAATTGAGGCTTGCTGGGCCTAgtgagttcag ... tttactgcagTGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtattccacttcaatattttgtcataaaattttattgatattggtttactgcagTGAGCCTTGGAAACGTCCTTCTTTTGCGAGTATTATGGATTCTTTGAGGCCATTGCTCAAACCCCCTACACCTCAACCTGGTCGTCCAAGCATGCCATTA
                                 tattgat  putative branch site (score: 3)
             aatattttgtcataaa  TA-rich tract