Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttataatcaacttgatatttgatctcctaattctttctcatccatctactatgctaattatttattttgttttttatttgcacttcagGAAAGATTAGCTCTGAAAGGAGGGGGAGCTGAACTTGGCCCTTCAGTTTTATTCTTTGGATGCAGGAACCGTCAAATG

Basic information

species Glycine max
transcript GLYMA13G00990.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209728345|gb|BW659982.1|BW659982
EST:     CATGATTGGTCCAGGCACTGGATTAGCTCCTTTCAGGGGTTTC-TGNCAG                         GAAAGATTAGCTCTGAAAGGAGGGGGAGCTGAACTTGGCCCTTCAGTTTT
genomic: CATGATTGGTCCAGGCACTGGATTAGCTCCTTTCAGGGGTTTCTTG-CAGgtttataatc ... tgcacttcagGAAAGATTAGCTCTGAAAGGAGGGGGAGCTGAACTTGGCCCTTCAGTTTT
EST: gi|254318721|gb|GR828665.1|GR828665
EST:     TCATGATTGGTCCAGGCACTGGATTAGCTCCTTTCAGGGGTTTCTTGCAG                         GAAAGATTAGCTCTGAAAGGAGGGGGAGCTGAACTTGGCCCTTCAGTTTTA
genomic: TCATGATTGGTCCAGGCACTGGATTAGCTCCTTTCAGGGGTTTCTTGCAGgtttataatc ... tgcacttcagGAAAGATTAGCTCTGAAAGGAGGGGGAGCTGAACTTGGCCCTTCAGTTTTA
EST: gi|209729002|gb|BW655032.1|BW655032
EST:     TCATGATTGGTCCAGGCACTGGATTAGCTCCTTTCAGGGGTTTCTTGCAG                         GAAAGATTAACTCTGAAAGGAGGGGGAGCTGAACTTGGCCCTTCAGTTTTA
genomic: TCATGATTGGTCCAGGCACTGGATTAGCTCCTTTCAGGGGTTTCTTGCAGgtttataatc ... tgcacttcagGAAAGATTAGCTCTGAAAGGAGGGGGAGCTGAACTTGGCCCTTCAGTTTTA
EST: gi|6914702|gb|AW396232.1|AW396232
EST:     AGCTCCTTTCAGGGGTTTCTTGCAG                         GAAAGATTAGCTCTGAAAGGAGGGGGAGCTGAACTTGGCCCTTCAGTTTTA
genomic: AGCTCCTTTCAGGGGTTTCTTGCAGgtttataatc ... tgcacttcagGAAAGATTAGCTCTGAAAGGAGGGGGAGCTGAACTTGGCCCTTCAGTTTTA
EST: gi|4313809|gb|AI460928.1|AI460928
EST:     TCATGATTGGTCCAGGCACTGGATTAGCTCCTTTCAGGGGTTTCTTGCAG                         GAAAGATTAGCTCTGAAAGGAGGGGGAGCTGAACTTGGCCCTTCAGTTTTA
genomic: TCATGATTGGTCCAGGCACTGGATTAGCTCCTTTCAGGGGTTTCTTGCAGgtttataatc ... tgcacttcagGAAAGATTAGCTCTGAAAGGAGGGGGAGCTGAACTTGGCCCTTCAGTTTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctcatccatctactatgctaattatttattttgttttttatttgcacttcagGAAAGATTAGCTCTGAAAGGAGGGGGAGCTGAACTTGGCCCTTCAGTTTTATTCTTTGGATGCAGGAACCGTCAAATG
                  tgctaat  putative branch site (score: 2)
                               ttttgttttttattt  putative PPT
          atctactatgctaatt  TA-rich tract