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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcagtgtacttttgatttgttaagaaccatttaattatgtatagatgcagtaagttgaattgcttttcaaactttacagGGAATCTATCATCCCAGCACCGGCTGAG

Basic information

species Glycine max
transcript GLYMA13G00980.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10236681|gb|BE805569.1|BE805569
EST:     GCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAG                         GGAATCTATCATCCCAGCACCGGCTGAG
genomic: GCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAGgtactcagtg ... aactttacagGGAATCTATCATCCCAGCACCGGCTGAG
EST: gi|207815553|gb|GD789138.1|GD789138
EST:     AATGTCTAAACATCTTGCAAAATCTGACAGGCCAAG                         GGAATCTATCATCCCAGCACCGGCTGAG
genomic: AATGTCTAAACATCTTGCAAAATCTGACAGGCCAAGgtactcagtg ... aactttacagGGAATCTATCATCCCAGCACCGGCTGAG
EST: gi|31472899|gb|CD414927.1|CD414927
EST:     GCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAG                         GGAATCTATCATCCCAGCACCGGCTGAG
genomic: GCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAGgtactcagtg ... aactttacagGGAATCTATCATCCCAGCACCGGCTGAG
EST: gi|51344846|gb|CO985579.1|CO985579
EST:     GCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAG                         GGAATCTATCATCCCAGCACCGGCTGAG
genomic: GCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAGgtactcagtg ... aactttacagGGAATCTATCATCCCAGCACCGGCTGAG
EST: gi|208149082|gb|GD945938.1|GD945938
EST:     AATGTCTAAACATCTTGCAAAATCTGACAGGCCAAG                         GGAATCTATCATCCCAGCACCGGCTGAG
genomic: AATGTCTAAACATCTTGCAAAATCTGACAGGCCAAGgtactcagtg ... aactttacagGGAATCTATCATCCCAGCACCGGCTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaccatttaattatgtatagatgcagtaagttgaattgcttttcaaactttacagGGAATCTATCATCCCAGCACCGGCTGAG
    atttaat  putative branch site (score: 4)
     tttaattatgtataga  TA-rich tract