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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaaaaccctgatgtttcttatttcacatagttatgcttatttgagttctattaatctaaactttctttcatttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCCAAGAAGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTC

Basic information

species Glycine max
transcript GLYMA12G34330.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G34330.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv19s0014g05070.t01 (Vitis vinifera), 3'ss of exon 14
--gtatgtaaaaccctgatgttt-cttatttcacatagttatgcttat--ttgagttctatta-atctaaac---tttctttcatttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCCAAGAAGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTC
   | ||  |||| |||||     |||| |||   || || | |||||  ||  |     ||| || || |    ||  ||||| ||   |  |||| || ||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| | ||||| ||||||||||||||||| || ||||
gtatttgagaaacactgatacaagcttaattctgttaattttacttatcattatgcatctttatatttatatatattcttttcaattatgac-agGCCATCAATAAGAGTCTGTCATCATTAAGTGATGTTATATTTGCCCTGGCAAAGAAGGAGGACCATGTACCATTTAGGAACTCAAAGCTTACGTATCTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208301565|gb|GE100321.1|GE100321
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|208092330|gb|GD888933.1|GD888933
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATT
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATT
EST: gi|207761031|gb|GD732352.1|GD732352
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|208183372|gb|GD987390.1|GD987390
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|208329464|gb|GE132554.1|GE132554
EST:     TCGTTCTTTCAAGGAGCGGGTCAACT-GGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: -CG-TCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|208304375|gb|GE104792.1|GE104792
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|193703461|gb|FK640089.1|FK640089
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|208242338|gb|GE042414.1|GE042414
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTG
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTG
EST: gi|207842019|gb|GD817207.1|GD817207
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCANCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|207825869|gb|GD797384.1|GD797384
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATG
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATG
EST: gi|193390545|gb|FK355009.1|FK355009
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAG
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAG
EST: gi|193682015|gb|FK624947.1|FK624947
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGCCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|208301052|gb|GE098535.1|GE098535
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAGGTGATGTTATATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|208248343|gb|GE047074.1|GE047074
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|193527063|gb|FK485457.1|FK485457
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATTATTTGCCTTGGC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTAT-ATTTGCCTTGGC
EST: gi|207841742|gb|GD817154.1|GD817154
EST:     AGCGTCTTTCGAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|207842328|gb|GD814166.1|GD814166
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGAC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGG-C
EST: gi|207775702|gb|GD749023.1|GD749023
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|193636299|gb|FK580794.1|FK580794
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|193336412|gb|FK298144.1|FK298144
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|193634846|gb|FK585265.1|FK585265
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|208198196|gb|GD996379.1|GD996379
EST:     TCGTTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: -CG-TCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|193486588|gb|FK452619.1|FK452619
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|193447165|gb|FK412352.1|FK412352
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTGTATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|208095378|gb|GD896182.1|GD896182
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|193394803|gb|FK359984.1|FK359984
EST:     AAGAAA-CCAA                         GCAAT-AAT-AAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: AAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|193722118|gb|FK657088.1|FK657088
EST:     GAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: GAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|193517591|gb|FK475288.1|FK475288
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTAGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|207789894|gb|GD759575.1|GD759575
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|207731987|gb|GD705192.1|GD705192
EST:     AGCG-CTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|193391613|gb|FK354174.1|FK354174
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATC
EST: gi|193651143|gb|FK598962.1|FK598962
EST:     GATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: GATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|193433206|gb|FK395242.1|FK395242
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|193361005|gb|FK323857.1|FK323857
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATC
EST: gi|193527386|gb|FK487600.1|FK487600
EST:     GACCGATTAGAAAAGAAAACCCAAA                         GCAATAAATAAAAGTCTGTCATCATTAA
genomic: GACCGATT-GAAA-GAAA-CCCAA-gtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAA
EST: gi|193527386|gb|FK487600.1|FK487600
EST:     GACCGATTAGAAAAGAAAACCCAAA                         GCAATAAATAAAAGTCTGTCATCATTAA
genomic: GACCGATT-GAAA-GAAA-CCCAA-gtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAA
EST: gi|21889374|gb|BQ742587.1|BQ742587
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|208151123|gb|GD946072.1|GD946072
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAAATAAAAAGTCTGTCATC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAA-TAAAA-GTCTGTCATC
EST: gi|193534161|gb|FK488658.1|FK488658
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|193684738|gb|FK622290.1|FK622290
EST:     GCGTCTTTCAAGGAGCGGGTCAACTTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: GCGTCTTTCAAGGAGCGGGTCAAC-TGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|207824692|gb|GD794262.1|GD794262
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|193608834|gb|FK563378.1|FK563378
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|208108893|gb|GD907605.1|GD907605
EST:     TCAACCGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: TCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|208175309|gb|GD976396.1|GD976396
EST:     CGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: CGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|208328988|gb|GE126702.1|GE126702
EST:     AGCGTCTTTCAAGGAGCGGGTCAACT-GGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|193558058|gb|FK514079.1|FK514079
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|207758194|gb|GD726364.1|GD726364
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|207791299|gb|GD760938.1|GD760938
EST:     CGGGTCAACT-GGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: CGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
EST: gi|208294483|gb|GE091726.1|GE091726
EST:     AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAA                         GCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC
genomic: AGCGTCTTTCAAGGAGCGGGTCAACTGGGGACCGATTGAAAGAAACCCAAgtatgtaaaa ... ttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagttatgcttatttgagttctattaatctaaactttctttcatttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCCAAGAAGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTC
                                  ctttctttcattt  CT-rich tract
                      tattaatctaaacttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtaaaaccctgatgtttcttatttcacatagttatgcttatttgagttctattaatctaaactttctttcatttgaaattagGCAATAAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCCTTGGCCAAGAAGGAGGATCATATCCCATTCAGGAACTCAAAGCTTACATACCTTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT