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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttatcttgagataatgaagctgaacttacatgttgaagttatgtcaagataataaacttttctttgaatacttcaaccttgtatgcttaacatctgcagGAAAATAGTGAGTGGAATGAATGGCAAGCTTCAGTTCTTCAGGAGCGTAATGTGGTTGAGAATGTTCACCGTTGGGCTTGTGG

Basic information

species Glycine max
transcript GLYMA12G29710.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G29710.2 (Glycine max), 3'ss of exon 14
lower sequence: Vv06s0004g02770.t01 (Vitis vinifera), 3'ss of exon 14
gttatcttgagataatgaagctg--aacttacatgttgaagttatgtcaagataataaacttttctttgaatacttcaaccttg-tatgcttaacatctgcagGAAAATAGTGAGTGGAATGAATGGCAAGCTTCAGTTCTTCAGGAGCGTAATGTGGTTGAGAATGTTCACCGTTGGGCTTGTGG
   |  || ||    ||    ||  |  |   | ||    ||        |||  | ||| |   ||| | || | |||| ||| |    |||   ||| |||||||||||||| |||||||| |||||| || | || || |||||||| ||||  ||||| |||||| | || |||||||||||
--caaattaagcatgtgcttgtgggagttggaaagtaattgtctgactttgatctttaacatagtttt-attaatacaactttgatccatttattctctccagGAAAATAGTGAATGGAATGAGTGGCAAACTACTGTCCTACAGGAGCGCAATGCTGTTGAAAATGTTTATCGATGGGCTTGTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23731914|gb|BU764104.1|BU764104
EST:     AACTTGTTCACCTGGCTCATAATCGAAACCTCATACTGACATGTCTTCAG                         GAAAATAGTGAGTGGAATGAATGGCAAGCTTCAGTTCTTCAGGAGCGTAAT
genomic: AACTTGTTCACCTGGCTCATAATCGAAACCTCATACTGACATGTCTTCAGgttagctgtg ... acatctgcagGAAAATAGTGAGTGGAATGAATGGCAAGCTTCAGTTCTTCAGGAGCGTAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caagataataaacttttctttgaatacttcaaccttgtatgcttaacatctgcagGAAAATAGTGAGTGGAATGAATGGCAAGCTTCAGTTCTTCAGGAGCGTAATGTGGTTGAGAATGTTCACCGTTGGGCTTGTGG
                                        gcttaac  putative branch site (score: 3)
     taataaacttttcttt  TA-rich tract