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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggcttaactctctctgttaagttattaaataaaatatgtatagtacatattttgtatgtgtttcaacagaaaagtgatagcagaaattttatttgatccggttttgatgactcactccagATGGGATCTCGATGTAAGAAGGCCTTAGTAGCGGAGAGTGTCAGAAAGTCCCTGCATAGTTGGTGTAAAAGAGTAAAACACAAGTCTAAGCATGATTCGT

Basic information

species Glycine max
transcript GLYMA12G29080.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G29080.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv12s0035g00260.t01 (Vitis vinifera), 3'ss of exon 14
gttggcttaactctctctgttaagttattaaataaaatatgtatagtacatattttgtatgtgtttcaacagaaaagtgatagcagaaattttatttgatccggttttgatgactcactccagATGGGATCTCGATGTAAGAAGGCCTTAGTAGCGGAGAGTGTCAGAAAGTCCCTGCATAGTTGGTGTAAAAGAGTAAAACACAAGTCTAAGCATGATTCGT
        |||    | ||| ||  ||      | || ||||         ||  |||     |   |   | ||| | |  | |    ||       ||||  |||   | | |   |  |||||||||||||||| ||||| |||||||| || || ||||| ||| | || || || || |||||||| ||||| ||| | ||||||| ||  || ||  
--------aaccgagtttgtgaaccta------agaacatgtg--------atggtgtgctaatagaatttggaaaatca-ggtatggtttgctaacaatcccttttccttcaatggttttagATGGGATCTCGATGCAAGAAAGCCTTAGTTGCTGAAAGTGTAAGAGAATCACTACACAGCTGGTGTAAGAGAGTCAAAGAGAAGTCTAGGCGCGACTCTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagaaaagtgatagcagaaattttatttgatccggttttgatgactcactccagATGGGATCTCGATGTAAGAAGGCCTTAGTAGCGGAGAGTGTCAGAAAGTCCCTGCATAGTTGGTGTAAAAGAGTAAAACACAAGTCTAAGCATGATTCGT
                                           gactcac  putative branch site (score: 2)
                                             ctcactcc  CT-rich tract
                agaaattttatttgat  TA-rich tract