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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctttttatcatctaacgtcattttcaaaactttaggtatccaatttgtatgcactcaatcttaatggatgctgtttgacagGGTCTTGATGATCTAATCAGTCTATTTCGGCGGCCTCCCTCTCGAAAAGTGAAAACTGCATAG

Basic information

species Glycine max
transcript GLYMA12G09710.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7691375|gb|AW759433.1|AW759433
EST:     TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG                         GGTCTTGATGATCTAATCAGTCTATTTCGGCGGCCTCCCTCTCGAAAAGTG
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatcttttt ... tgtttgacagGGTCTTGATGATCTAATCAGTCTATTTCGGCGGCCTCCCTCTCGAAAAGTG
EST: gi|17518642|gb|BM187684.1|BM187684
EST:     TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGG                         GGTCTTGATGATCTAATCAGTCTATTTCGGCGGCCTCCCTCTCGAAAAGTG
genomic: TGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACCACTAGGgtatcttttt ... tgtttgacagGGTCTTGATGATCTAATCAGTCTATTTCGGCGGCCTCCCTCTCGAAAAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaactttaggtatccaatttgtatgcactcaatcttaatggatgctgtttgacagGGTCTTGATGATCTAATCAGTCTATTTCGGCGGCCTCCCTCTCGAAAAGTGAAAACTGCATAG
                                tcttaat  putative branch site (score: 3)
               aatttgtat  TA-rich tract