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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttaactttcaacactcccttggcatctttttaattttgtatttctatatgaataatacttatatgctctgttctgtttttaaccagCTTGTGCTTTTACTTCTGGCTGTTATCTCTGTGCCCTGGATGCTATTGCCAAAACCTTTTATTTTGAAGAAGCAACATGAAGCT

Basic information

species Glycine max
transcript GLYMA12G04330.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58015179|gb|CX701921.1|CX701921
EST:     CAGATGATTTGGGTGAGAACCAACTCTTTGCTGTTCAGAAAAATCTGCAG                         CTTGTGCTTTTACTTCTGGCTGTTATCTCTGTGCCCTGGATGCTATTGCCA
genomic: CAGATGATTTGGGTGAGAACCAACTCTTTGCTGGTCAGAAAAATCTGCAGgttggttaac ... ttttaaccagCTTGTGCTTTTACTTCTGGCTGTTATCTCTGTGCCCTGGATGCTATTGCCA
EST: gi|193523652|gb|FK479955.1|FK479955
EST:     CAGATGATTTGGGTGAGAACCAACTCTTTGCTGGTCAGAAAAATCTGCAG                         CTTGTGCTTTTACTTCTGGCTGTTATCTCTGTGCCCTGGATGCTATTGCCA
genomic: CAGATGATTTGGGTGAGAACCAACTCTTTGCTGGTCAGAAAAATCTGCAGgttggttaac ... ttttaaccagCTTGTGCTTTTACTTCTGGCTGTTATCTCTGTGCCCTGGATGCTATTGCCA
EST: gi|151394145|gb|EV264016.1|EV264016
EST:     CAGATGATTTGGGTGAGAACCAACTCTTTGCTGGTCAGAAAAATCTGCAG                         CTTGTGCTTTTACTTCTGGCTGTTATCTCTGTGCCCTGGATGCTATTGCCA
genomic: CAGATGATTTGGGTGAGAACCAACTCTTTGCTGGTCAGAAAAATCTGCAGgttggttaac ... ttttaaccagCTTGTGCTTTTACTTCTGGCTGTTATCTCTGTGCCCTGGATGCTATTGCCA
EST: gi|192300278|gb|FG988785.1|FG988785
EST:     CAGATGATTTGGGTGAGAACCAACTCTTTGCTGGTCAGAAAAATCTGCAG                         CTTGTGCTTTTACTTCTGGCTGTTATCTCTGTGCCCCGGATGCTATTGCCA
genomic: CAGATGATTTGGGTGAGAACCAACTCTTTGCTGGTCAGAAAAATCTGCAGgttggttaac ... ttttaaccagCTTGTGCTTTTACTTCTGGCTGTTATCTCTGTGCCCTGGATGCTATTGCCA
EST: gi|58021456|gb|CX708197.1|CX708197
EST:     CAGATGATTTGGGTGAGAACCAACTCTTTGCTGGTCAGAAAAATCTGCAG                         CTTGTGCTTTTACTTCTGGCTGTTATCTCTGTGCCCTGGATGCTATTGCCA
genomic: CAGATGATTTGGGTGAGAACCAACTCTTTGCTGGTCAGAAAAATCTGCAGgttggttaac ... ttttaaccagCTTGTGCTTTTACTTCTGGCTGTTATCTCTGTGCCCTGGATGCTATTGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattttgtatttctatatgaataatacttatatgctctgttctgtttttaaccagCTTGTGCTTTTACTTCTGGCTGTTATCTCTGTGCCCTGGATGCTATTGCCAAAACCTTTTATTTTGAAGAAGCAACATGAAGCT
 ttttaat  putative branch site (score: 3)
                                  ctctgttctgttttt  putative PPT
     tgtatttctatatgaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttggttaactttcaacactcccttggcatctttttaattttgtatttctatatgaataatacttatatgctctgttctgtttttaaccagCTTGTGCTTTTACTTCTGGCTGTTATCTCTGTGCCCTGGATGCTATTGCCAAAACCTTTTATTTTGAAGAAGCAACATGAAGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC