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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttctcatcttttgactattcatttattctgtgaatccatgatagatgaaaatttatgctctcagGTACCACTGTGAAGTTTGTTTTGGAGCAGGATAAAGCTTCCTTTATTCGGTTAATTGGTTTAAGTGTTCTTCAAAGTGTTGCATCTTCTTTCATTGCTCC

Basic information

species Glycine max
transcript GLYMA11G38160.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G38160.1 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os05g01700.1 (Oryza sativa), 3'ss of exon 10
--------------gtattttctcatcttttgactattcatttattctg----tgaatccatgatagatgaaaatttatgctctcagGTACCACTGTGAAGTTTGTTTTGGAGCAGGATAAAGCTTCCTTTATTCGGTTAATTGGTTTAAGTGTTCTTCAAAGTGTTGCATCTTCTTTCATTGCTCC
               ||| ||   |   |  ||  | |||      |||    |||||   |  |     | |  | ||  | ||||| || ||||| |||||||| ||||||||||| |||||| | ||||||||  | |||||| | ||||| || ||||||  ||||  ||||||  | || ||
gttggctttgttcaatatcttactaatgtcaga--actcagaagagctgcaaatgaatttcttgtctgatacatctcattttgtcagGGACAACTGTTAAGTTTGTCTTGGAGCAGGACAAAGCTGCATTTATTCGTCTGATTGGTATCAGTGTCCTGCAAAGTTCTGCAAATTCTTTTGTGGCCCC

upper sequence: GLYMA11G38160.1 (Glycine max), 3'ss of exon 14
lower sequence: GRMZM2G060045_T01 (Zea mays), 3'ss of exon 12
-gtattttctcatcttttgactat--tcatttatt-------ctgtgaatcca--tgatagatgaaaattt--atgctctcagGTACCACTGTGAAGTTTGTTTTGGAGCAGGATAAAGCTTCCTTTATTCGGTTAATTGGTTTAAGTGTTCTTCAAAGTGTTGCATCTTCTTTCATTGCTCC
  | || | | | |  |    |||  ||  || ||       |||  | |  |  |   | |||| | ||   ||  |   ||| || |||||||||||||| ||||| ||||| |||| | |||||||||| || |||||| | ||| |||| ||||||| ||||  ||||||  | || ||
gttgttcttttaaccctctgttatcttccgttgttagaaaagctgcaagtgtagttctcatatgatacttcaaatcttactagGGACAACTGTGAAGTTTGTCTTGGAACAGGACAAAGATGCCTTTATTCGCTTGATTGGTGTCAGTATTCTACAAAGTGGTGCAAATTCTTTTGTGGCACC

upper sequence: GLYMA11G38160.1 (Glycine max), 3'ss of exon 14
lower sequence: AT4G39850.2 (Arabidopsis thaliana), 3'ss of exon 13
----gtattttctcatcttttgactattca--tttattc-tgtgaatccatgatagatgaaaatttatgctct---cagGTACCACTGTGAAGTTTGTTTTGGAGCAGGATAAAGCTTCCTTTATTCGGTTAATTGGTTTAAGTGTTCTTCAAAGTGTTGCATCTTCTTTCATTGCTCC
      ||  ||     | ||   |  |||  ||||||  |  |  ||| |     |  |  |   ||| | |   |||| ||||||||||||| ||| |||||||| ||||| ||  ||||| |||| || |||||||| |||||||| ||||||| |||||||||| | ||||||||
gtaaacatactccatattgttacttgatcagttttattgatagggttccttttctaacaagcaaccatgatttttgcagGGACCACTGTGAAGTATGTCTTGGAGCAAGATAAGGCAGCCTTTGTTCGTTTGATTGGTTTGAGTGTTCTCCAAAGTGGTGCATCTTCTATAATTGCTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgactattcatttattctgtgaatccatgatagatgaaaatttatgctctcagGTACCACTGTGAAGTTTGTTTTGGAGCAGGATAAAGCTTCCTTTATTCGGTTAATTGGTTTAAGTGTTCTTCAAAGTGTTGCATCTTCTTTCATTGCTCC
 ttttgac  putative branch site (score: 3)
                                              tgctctc  putative PPT
                               atagatgaaaatttat  TA-rich tract