1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...actgaaaatgtactctgtctgctagttagaatggagctactattgctgttgtccatgtgtatcccttctgtaacattattactatgttcttgttttatagGGTGACAAAAAGGATGCTGTTGCTACAAATCGGACCCTGGATTTGACATCTGGTTTTGAAGTTGGTCCTGCAACAACTGCTGGTGCAGATGCATCATCAA
species | Glycine max |
transcript | GLYMA11G20520.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CTCCATTGGTTCCTTCTGGTTTCCGCATTATCCCATTAGATTCAAAACCA GGTGACAAAAAGGATGCTGTTGCTACAAATCGGACCCTGGATTTGACATCTEST: gi|151393654|gb|EV263529.1|EV263529
genomic: CTCCATTGGTTCCTTCTGGTTTCCGCATTATCCCATTAGATTCAAAACCAgttgagtttt ... tgttttatagGGTGACAAAAAGGATGCTGTTGCTACAAATCGGACCCTGGATTTGACATCT
EST: CTCCATTGGTTCCTTCTGGTTTCCGCATTATCCCATTAGATTCAAAACCA GGTGACAAAAAGGATGCTGTTGCTACAAATCGGACCCTGGATTTGACATCTEST: gi|6726825|gb|AW311244.1|AW311244
genomic: CTCCATTGGTTCCTTCTGGTTTCCGCATTATCCCATTAGATTCAAAACCAgttgagtttt ... tgttttatagGGTGACAAAAAGGATGCTGTTGCTACAAATCGGACCCTGGATTTGACATCT
EST: CTCCATTGGTTCCTTCTGGTTTCCGCATTATCCCATTAGATTCAAAACCA GGTGACAAAAAGGATGCTGTTGCTACAAATCGGACCCTGGATTTGACATCT
genomic: CTCCATTGGTTCCTTCTGGTTTCCGCATTATCCCATTAGATTCAAAACCAgttgagtttt ... tgttttatagGGTGACAAAAAGGATGCTGTTGCTACAAATCGGACCCTGGATTTGACATCT
ctgttgtccatgtgtatcccttctgtaacattattactatgttcttgttttatagGGTGACAAAAAGGATGCTGTTGCTACAAATCGGACCCTGGATTTGACATCTGGTTTTGAAGTTGGTCCTGCAACAACTGCTGGTGCAGATGCATCATCAA
ctgtaac putative branch site (score: 3)
ttcttgtttt putative PPT
taacattattactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgaaaatgtactctgtctgctagttagaatggagctactattgctgttgtccatgtgtatcccttctgtaacattattactatgttcttgttttatagGGTGACAAAAAGGATGCTGTTGCTACAAATCGGACCCTGGATTTGACATCTGGTTTTGAAGTTGGTCCTGCAACAACTGCTGGTGCAGATGCATCATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - aatgtac
- - - - - - - -tgtctgc
- - - - - - - - - - - - - - - - - -gctacta
- - - - - - - - - - - - - - - - - - - - - -tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - ccatgtg