Sequence
atgc intronic sequence ATGC exonic sequence...gctcagttttaaatatctattgttgaatactaccctggttatgtgaaacaactgacagttgtttcttagattgaatactgatatgctgtccttgatgcagGCAAAAGGTTTTGTTGCTAATTCCTTTTACAGTGGATTGTCAGCTACTGAGTTTTTCTTCCATACAATGGGAGGGCGAGAAGGGCTTGTTGATACAGCG
Basic information
species | Glycine max |
transcript | GLYMA11G15530.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G15530.1 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os04g41490.1 (Oryza sativa), 3'ss of exon 16
gctcagttttaaatatctattgttg-aatactaccctggttat--gtgaaacaactgacagttgtttcttagattgaatactgatatgc----tgtccttgatgcagGCAAAAGGTTTTGTTGCTAATTCCTTTTACAGTGGATTGTCAGCTACTGAGTTTTTCTTCCATACAATGGGAGGGCGAGAAGGGCTTGTTGATACAGCG
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-------ttcaacttgttctgactgcaattttgtttgaattaaaggtcacgaaatcagcacattttggtatattcacatacaaatatgttttgtattccatttccagGCCAAAGGCTTTGTCGCTAATTCTTTCTATACTGGCTTGACTGCCACCGAATTCTTCTTCCATACGATGGGTGGGCGAGAAGGTCTTGTTGATACAGCG
upper sequence: GLYMA11G15530.1 (Glycine max), 3'ss of exon 14
lower sequence: GRMZM2G080176_T01 (Zea mays), 3'ss of exon 16
gctcagttttaaatatctattgttgaatactaccctggttatgtgaaacaactgacagttgtttcttagattgaatactgatatg---ctgtccttga--tgcagGCAAAAGGTTTTGTTGCTAATTCCTTTTACAGTGGATTGTCAGCTACTGAGTTTTTCTTCCATACAATGGGAGGGCGAGAAGGGCTTGTTGATACAGCG
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aatgaatctgccatttttacttt---ataatttcaaaatgaagtagat--atttaaatttgttaacacaaaaacattctgataaggttttgtcttccatttgcagGCTAAAGGTTTTGTTGCTAATTCATTCTATACTGGTTTGACTGCTACTGAGTTTTTCTTCCACACAATGGGTGGACGAGAAGGTCTTGTTGACACGGCG
upper sequence: GLYMA11G15530.1 (Glycine max), 3'ss of exon 14
lower sequence: AT5G60040.1 (Arabidopsis thaliana), 3'ss of exon 17
gctcagttttaaatatctattgttgaatactaccctggttatgtgaaacaactgacagttgtttcttagattgaatactgatatgctgtcctt-----gatgcagGCAAAAGGTTTTGTTGCTAATTCCTTTTACAGTGGATTGTCAGCTACTGAGTTTTTCTTCCATACAATGGGAGGGCGAGAAGGGCTTGTTGATACAGCG
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----aggcttct-tgggcatcaccttatgggatcctgattacactaacttctggttactactttgagagctaggaccctgatctcatgtcttcttgccatcgcagGCGAAAGGTTTTGTTGCTAATTCGTTCTACAGTGGTCTTACTGCCACAGAATTTTTCTTTCACACTATGGGTGGACGAGAAGGTCTAGTTGATACAGCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207788036|gb|GD759706.1|GD759706EST: AGAAAATCAAAAACCCCTGCT GCAAAAGGTTTTGTTGCTAATTCCTTTTACAGTGGATTGTCAGCTACTGAG
genomic: AGAAAATCAAAAACCCCTGCTgtatgtttgt ... cttgatgcagGCAAAAGGTTTTGTTGCTAATTCCTTTTACAGTGGATTGTCAGCTACTGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaacaactgacagttgtttcttagattgaatactgatatgctgtccttgatgcagGCAAAAGGTTTTGTTGCTAATTCCTTTTACAGTGGATTGTCAGCTACTGAGTTTTTCTTCCATACAATGGGAGGGCGAGAAGGGCTTGTTGATACAGCG
ctgtcctt CT-rich tract
attgaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gctcagttttaaatatctattgttgaatactaccctggttatgtgaaacaactgacagttgtttcttagattgaatactgatatgctgtccttgatgcagGCAAAAGGTTTTGTTGCTAATTCCTTTTACAGTGGATTGTCAGCTACTGAGTTTTTCTTCCATACAATGGGAGGGCGAGAAGGGCTTGTTGATACAGCG
- - - - - - - - - - tgttgaa
- - - - - - - - - - - - - - -ctaccct
- - - - - - - - - - - - - - - - - - ggttatg
- - - - - - - - - - - - - - - - - - - - - - - - caactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgtc