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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatttgactcaattcttgtttcataattctataatttatatcttctttccatatatactgaaatatgtattatgtattccgatgttgcttttcttaccagTCTTCAGAACCTGTGGAGCTTACTGAAGCAGAGACAGAATATGCAGTTAATGTTGTTAAACACATTTTTGATCGGCATGTTGTGTTTCAATACAACTGCA

Basic information

species Glycine max
transcript GLYMA11G12610.2
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G12610.1 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os03g12590.1 (Oryza sativa), 3'ss of exon 14
gttatttgactcaattcttgtttcataattctataatttatatcttctttccatatatactgaaatatgtattatgtattccgatgttgcttttcttaccagTCTTCAGAACCTGTGGAGCTTACTGAAGCAGAGACAGAATATGCAGTTAATGTTGTTAAACACATTTTTGATCGGCATGTTGTGTTTCAATACAACTGCA
                             ||| ||  || |||    ||      | |  |  | ||   ||  |  |  ||     |   ||| |  |||||| ||||||||||||||||| || || || ||||| ||||||||  ||||||| ||||| ||||| |    | | ||||||||||| || |||||||| |
----------------------------gtctgtagcttctataccattaatgattttgattgagtacacatgctaaacccc-----tctctttttccccagTCCTCAGAACCTGTGGAGCTGACAGAGGCGGAGACTGAATATGCGATTAATGTGGTTAAGCACATATACAGTAGCCATGTTGTGTTGCAGTACAACTGTA

upper sequence: GLYMA11G12610.1 (Glycine max), 3'ss of exon 14
lower sequence: GRMZM2G036034_T01 (Zea mays), 3'ss of exon 14
gttatttgactcaattcttgtttcataattctataatttatatcttctttccatatatactgaaatatgtattatgtattccga--tgttgcttttcttaccagTCTTCAGAACCTGTGGAGCTTACTGAAGCAGAGACAGAATATGCAGTTAATGTTGTTAAACACATTTTTGATCGGCATGTTGTGTTTCAATACAACTGCA
|||  |  |   | | |||||       ||||||     ||      | |  |  |  ||||||     | | |||| ||   |  | ||| |     | |||||| || | |||||| ||  | |||||||| ||||| |||||  ||||||||||||| || || ||||||||| | ||||||||| | ||||||||||| |
gttggt--atatattacttgtcc-----ttctatggaagatgggcattatggacctg-actgaatctcatttgatgtgttgtaactttttgttcgcacttccagTCATCTGCACCTGTAGAATTGACTGAAGCTGAGACTGAATACTCAGTTAATGTTGTGAAGCATATTTTTGATGGACATGTTGTGCTCCAATACAACTGTA

upper sequence: GLYMA11G12610.1 (Glycine max), 3'ss of exon 14
lower sequence: GRMZM2G415729_T01 (Zea mays), 3'ss of exon 3
gttatttgactcaattcttgtttcataattctataatttatatcttctttccatatatactgaaatatgtattatgtattccga--tgttgcttttcttaccagTCTTCAGAACCTGTGGAGCTTACTGAAGCAGAGACAGAATATGCAGTTAATGTTGTTAAACACATTTTTGATCGGCATGTTGTGTTTCAATACAACTGCA
|||  |  |   | | |||||       ||||||     ||      | |  |  |  ||||||     | | |||| ||   |  | ||| |     | |||||| || | |||||| ||  | |||||||| ||||| |||||  ||||||||||||| || || ||||||||| | ||||||||| | ||||||||||| |
gttggt--atatattacttgtcc-----ttctatggaagatgagcattatggacctg-actgaatctcatttgatgtgttgtaactttttgttcgcacttccagTCATCTGCACCTGTAGAATTGACTGAAGCTGAGACTGAATACTCAGTTAATGTTGTGAAGCATATTTTTGATGGACATGTTGTGCTCCAATACAACTGTA

upper sequence: GLYMA11G12610.1 (Glycine max), 3'ss of exon 14
lower sequence: GRMZM2G178618_T01 (Zea mays), 3'ss of exon 14
gttatttgactcaattcttgtttcataattctataatttatatcttctttccatatatactgaaatatgtattatgtattccga--tgttgcttttcttaccagTCTTCAGAACCTGTGGAGCTTACTGAAGCAGAGACAGAATATGCAGTTAATGTTGTTAAACACATTTTTGATCGGCATGTTGTGTTTCAATACAACTGCA
          |   |   | || | |  ||||||     ||      | |  | ||   |||||     | | |||| ||   |  | |||       | |||||| || | |||||| ||  | |||||||| ||||| |||||  |||| |||||||| || || ||||||||||| ||||||||| | ||||||||||| |
---------gttggtatatattacttc-ttctatggaagatgaacattatggacatg-gctgaatctcatttcatgtgttgtaactttttgtccgctcttccagTCATCTGCACCTGTAGAATTGACTGAAGCTGAGACCGAATACTCAGTGAATGTTGTGAAGCATATTTTTGATCGACATGTTGTGCTCCAATACAACTGTA

upper sequence: GLYMA11G12610.1 (Glycine max), 3'ss of exon 14
lower sequence: AT4G34450.1 (Arabidopsis thaliana), 3'ss of exon 13
gttatttgactcaattcttgtttcataattctataatttatatcttctttccatatatactgaaatatgtattatgtattccgatgttgcttttcttaccagTCTTCAGAACCTGTGGAGCTTACTGAAGCAGAGACAGAATATGCAGTTAATGTTGTTAAACACATTTTTGATCGGCATGTTGTGTTTCAATACAACTGCA
                   |||      |  | |   || | | || ||   || | || ||   ||| |  | ||  ||    |  | ||||  ||  ||||||||   |||||||||||| ||||||||||| |||||||| || || ||||||||||| || || |||||  | ||||| |||||||| ||||||||||
-------------------gttaggggctgatttgtcttctgtgttattctaatgt-taatggcttatcttgtttgc-tttaacttgtactttctttttcagTCTTCTTTACCTGTGGAGCTAACTGAAGCAGAAACAGAATACGCTGTCAATGTTGTTAAGCATATCTTTGACAGTCATGTGGTGTTTCAGTACAACTGCA

upper sequence: GLYMA11G12610.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 14
gttatttgactcaattcttgtttcataattctataatttatatcttctttccatatatactgaaatatgtattatgtattccgatgttgcttttcttaccagTCTTCAGAACCTGTGGAGCTTACTGAAGCAGAGACAGAATATGCAGTTAATGTTGTTAAACACATTTTTGATCGGCATGTTGTGTTTCAATACAACTGCA
       | | |     || ||||| |      | ||  | ||   ||      | ||  |   | ||  |  |  |||||   | | | |||  ||| ||||| |||| |||||| ||||| || |||||||| ||||||||||| ||||||||||| || |||||||||||| ||||||||||||| || ||||||||||
-------gtcccctgctttttttcacatacgcttcatgcacatggactaatttgaaatgttacta-attcagaagttattcttttttcgttttatttatcagTCCTCAGCACCTGTAGAGCTGACAGAAGCAGAAACAGAATATGCTGTTAATGTTGTCAAGCACATTTTTGATAGGCATGTTGTGTTCCAGTACAACTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttccatatatactgaaatatgtattatgtattccgatgttgcttttcttaccagTCTTCAGAACCTGTGGAGCTTACTGAAGCAGAGACAGAATATGCAGTTAATGTTGTTAAACACATTTTTGATCGGCATGTTGTGTTTCAATACAACTGCA
                                       ttgcttttcttacc  CT-rich tract
     atatatactgaaatat  TA-rich tract