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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaggactaattaaaagctcggtagtaaatgtatttattgtaacttataagtgataactgatatcagttgggagttacgagtctcttttgcattactgcagGCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCAAGGTTGGATATGGAAATTCAGGAGTAACAGGCTAGGTTTGTACGAGCAC

Basic information

species Glycine max
transcript GLYMA11G07910.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15662145|gb|BI699516.1|BI699516
EST:     GGATATATTGCAACAATAACTCTCTTCCAATCATGATGATG                         GCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCA
genomic: GGATATATTGCAACAATAACTCTCTTCCAATCATGATGATGgtacacttct ... attactgcagGCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCA
EST: gi|11687754|gb|BF595430.1|BF595430
EST:     ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATG                         GCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCA
genomic: ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATGgtacacttct ... attactgcagGCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCA
EST: gi|51343377|gb|CO984110.1|CO984110
EST:     ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATG                         GCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCA
genomic: ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATGgtacacttct ... attactgcagGCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCA
EST: gi|18039193|gb|BM307487.1|BM307487
EST:     ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATG                         GCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCA
genomic: ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATGgtacacttct ... attactgcagGCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCA
EST: gi|192324841|gb|FK015352.1|FK015352
EST:     ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATG                         GCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATC
genomic: ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATGgtacacttct ... attactgcagGCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATC
EST: gi|254331134|gb|GR843253.1|GR843253
EST:     ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATG                         GCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCA
genomic: ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATGgtacacttct ... attactgcagGCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCA
EST: gi|208290003|gb|GE082683.1|GE082683
EST:     ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAGTCATGATGATG                         GCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCA
genomic: ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATGgtacacttct ... attactgcagGCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCA
EST: gi|21257365|gb|BQ454253.1|BQ454253
EST:     ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATG                         GCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCA
genomic: ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATGgtacacttct ... attactgcagGCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCA
EST: gi|213597190|gb|DB981582.1|DB981582
EST:     ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATG                         GCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCA
genomic: ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATGgtacacttct ... attactgcagGCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCA
EST: gi|5666923|gb|AI930959.1|AI930959
EST:     ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATG                         GCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCA
genomic: ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATGgtacacttct ... attactgcagGCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCA
EST: gi|9984165|gb|BE658273.1|BE658273
EST:     ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATG                         GCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCA
genomic: ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATGgtacacttct ... attactgcagGCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCA
EST: gi|18720306|gb|BM523249.1|BM523249
EST:     ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATG                         GCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCA
genomic: ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATGgtacacttct ... attactgcagGCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCA
EST: gi|120533133|gb|EH261266.1|EH261266
EST:     ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATG                         GCGCTTTTGGTTACTCTCAATCTCATCTCCATA
genomic: ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATGgtacacttct ... attactgcagGCGCTTTTGGTTACTCTCAATCTCATCTCCATA
EST: gi|254331133|gb|GR843252.1|GR843252
EST:     ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATG                         GCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCA
genomic: ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATGgtacacttct ... attactgcagGCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCA
EST: gi|11689775|gb|BF597451.1|BF597451
EST:     ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATG                         GCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCA
genomic: ATGAAGAATGGATATATTGCAACAATAACTCTCTTCCAATCATGATGATGgtacacttct ... attactgcagGCGCTTTTGGTTACTCTCAATCTCATCTCCATATTGTTCTAAGATCTATCA