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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactattctgataagaaaatttccactgtttaattagttctttctgaagcattaattgagccttaacatattatctctgaaactatttgatgcattatatctttgttgtttgaaaactagGTCCGTGGAGCTAGAGCTGAAGAGACTCAAAGTCATGTACACAGAATGTACTTTATGGGTCCTAATACTTTTAGAGAACCCTGGCATCTTCCTTACTCAC

Basic information

species Glycine max
transcript GLYMA11G04290.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G04290.1 (Glycine max), 3'ss of exon 14
lower sequence: GRMZM2G015291_T01 (Zea mays), 3'ss of exon 6
gtactattctgataagaaaatttccactgtttaattagttctttctgaagcattaattgagccttaacatattatctctgaaactatttgatgcattatatctttgttgtttgaaaactagGTCCGTGGAGCTAGAGCTGAAGAGACTCAAAGTCATGTACACAGAATGTACTTTATGGGTCCTAATACTTTTAGAGAACCCTGGCATCTTCCTTACTCAC
  | | | |  | ||  ||      ||   || ||      |||||  |        | | |  |  ||| || | | || |   ||     |  |  |    ||  | | |    || |||  |  |     || || ||||| ||||| || ||||| |||||||||||||| ||||| |||||||||||  |||| ||||||||||| || ||||   
-aaatgtacctagaaagaag-----acgaatttatagcccttttcttga--------taaactcttgcatgttgtgtttgtactgataaatggtgtgttcctcttcctttgtagGTACCAGGGGCAAG----CAGGGCAGAAGAAACTCAGAGCCATGTCCACAGAATGTACTTCATGGGACCTAATACTTTCCGAGAGCCCTGGCATCTCCCCTACT---

upper sequence: GLYMA11G04290.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv02s0012g00460.t01 (Vitis vinifera), 3'ss of exon 14
gtactattctgataagaaaatttccactgtttaattagttctttctgaagcattaattgagccttaacatattatctctgaaactatttgatgcattatatctttgttgtttgaaaactagGTCCGTGGAGCTAGAGCTGAAGAGACTCAAAGTCATGTACACAGAATGTACTTTATGGGTCCTAATACTTTTAGAGAACCCTGGCATCTTCCTTACTCAC
||||     |||||  ||   ||||    |||         ||||  |     | | | ||||  |     ||||| || | || ||||  |||||| ||| ||| |   ||  ||    ||| || ||  | ||||||||||| ||||| || |||||  |||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
gtacatgattgatagcaagtattccttctttt------ccttttcaaatatgatcaat-agccacatgtggttatccct-agacaattttctgcattttatgtttctgaatttcaa----gGTGCGGGGGACCAGAGCTGAAGAAACTCAGAGCCATGTTTACAGGATGTACTTTATGGGTCCCAATACTTTCAGAGAACCCTGGCATCTTCCTTACTCTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatattatctctgaaactatttgatgcattatatctttgttgtttgaaaactagGTCCGTGGAGCTAGAGCTGAAGAGACTCAAAGTCATGTACACAGAATGTACTTTATGGGTCCTAATACTTTTAGAGAACCCTGGCATCTTCCTTACTCAC
                            attatatctttgtt  TA-rich tract