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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttctataactgaaagtggttattcttggttgcgtctaatgaaatattttattctatggttctatctctttcaagtatgaagccaattttactctttgaaaattgtatttcatataaaatgactttttgttttgaatctgatttgatggtatggtggcagCTATTAGAAGGATTGCAGAGCTCTTTGATCATCTCAAAGATTCCTTCGGTTTCACATAATCGTAATACCAAGA

Basic information

species Glycine max
transcript GLYMA11G03650.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G03650.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv00s0229g00110.t01 (Vitis vinifera), 3'ss of exon 16
gtaagtttctataactgaaagtggttattcttggttgcgtctaatgaaatattttattctatggttctatctctttcaagtatgaagccaattttactctttgaaaattgtatttcatata------aaatgactttttgttttgaatctgatttgatggtat--ggtggcagCTATTAGAAGGATTGCAGAGCTCTTTGATCATCTCAAAGATTCCTTCGGTTTCACATAATCGTAATACCAAGA------------------------
                                                                       ||||| |  |  ||||  | ||| |   ||||| | || ||| |  | |       || | |||||  || | | ||      ||||  | |  | || |||||||| |||||| |||| ||||| ||||||||||||||||||||||| ||||||||| |         ||| |                        
-----------------------------------------------------------------------tctttta--tgcgaagttattttgagattttgatacttatatcttctgtctactctaattaactttcagtatagcatacttactgatcttttttgttgacagCTATTGGAAGGACTGCAAAGCTCATTGATCATCTCAAAGATTCCTTCTGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26060112|gb|CA803026.1|CA803026
EST:     ACATGGTTGAGCCCCGGAGATCCAATCGCAGGATCCAGCCAACATCAAGA                         CTATTAGAAGGATTGCAGAGCTCTTTGATCATCTCAAAGATTCCTTCGGTT
genomic: ACATGGTTGAGCCCCGGAGATCCAATCGCAGGATCCAGCCAACATCAAGAgtaagtttct ... atggtggcagCTATTAGAAGGATTGCAGAGCTCTTTGATCATCTCAAAGATTCCTTCGGTT
EST: gi|15200671|gb|BI424469.1|BI424469
EST:     ACATGGTTGAGCCCCGGAGATCCAATCGCAGGATCCAGCCAACATCAAAA                         CTATTACAAGGATTGCAGAGCTCTTTGATCATCTCAAAGATTCCTTCGGTT
genomic: ACATGGTTGAGCCCCGGAGATCCAATCGCAGGATCCAGCCAACATCAAGAgtaagtttct ... atggtggcagCTATTAGAAGGATTGCAGAGCTCTTTGATCATCTCAAAGATTCCTTCGGTT
EST: gi|151403372|gb|EV273182.1|EV273182
EST:     ACATGGTTGAGCCCCGGAGATCCAATCGCAGGATCCAGCCAACATCAAGA                         CTATTAGAAGGATTGCAGAGCTCTTTGATCATCTCAAAGATTCCTTCGGTT
genomic: ACATGGTTGAGCCCCGGAGATCCAATCGCAGGATCCAGCCAACATCAAGAgtaagtttct ... atggtggcagCTATTAGAAGGATTGCAGAGCTCTTTGATCATCTCAAAGATTCCTTCGGTT
EST: gi|15201374|gb|BI424836.1|BI424836
EST:     ACATGGTTGAGCCCCGGAGATCCAATCGCAGGATCCAGCCAACATCAAGA                         CTATTAGAAGGATTGCAGAGCTCTTTGATCATCTCAAAGATTCCTTCGGTT
genomic: ACATGGTTGAGCCCCGGAGATCCAATCGCAGGATCCAGCCAACATCAAGAgtaagtttct ... atggtggcagCTATTAGAAGGATTGCAGAGCTCTTTGATCATCTCAAAGATTCCTTCGGTT
EST: gi|207765805|gb|GD735124.1|GD735124
EST:     ACATGGTTGAGCCCCGGAGATCCAATCGCAGGATCCAGCCAACATCAAGA                         CTATTAGAAGGATTGCAGAGCTCTTTGATCATCTCAAAGATTCCTTCGGTT
genomic: ACATGGTTGAGCCCCGGAGATCCAATCGCAGGATCCAGCCAACATCAAGAgtaagtttct ... atggtggcagCTATTAGAAGGATTGCAGAGCTCTTTGATCATCTCAAAGATTCCTTCGGTT
EST: gi|208269653|gb|GE072145.1|GE072145
EST:     ACATGGTTGAGCCCCGGAGATCCAATCGCAGGATCCAGCCAACATCAAGA                         CTATTAGAAGGATTGCAGAGCTCTTTGATCATCTCA
genomic: ACATGGTTGAGCCCCGGAGATCCAATCGCAGGATCCAGCCAACATCAAGAgtaagtttct ... atggtggcagCTATTAGAAGGATTGCAGAGCTCTTTGATCATCTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttcatataaaatgactttttgttttgaatctgatttgatggtatggtggcagCTATTAGAAGGATTGCAGAGCTCTTTGATCATCTCAAAGATTCCTTCGGTTTCACATAATCGTAATACCAAGA
      atataaaatgactttt  TA-rich tract