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gtctctaataactttctatcttaataagtactatattttgtttcttaatgtgaaattgcccttgaagtgatattaatggaactcttttccccccttttattaacagCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGAAAGTTTGTTGCCCAGGGAGCTTATGACACCCGCAATATATTCCAGTCACTAGATCTTGCATGGACTT
species | Glycine max |
transcript | GLYMA10G42940.2 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTG CTGTATCTGGAATTTTTGGAGAAGTTTGAGAGAAAGTTTGTTGCCCAGGGAEST: gi|7685689|gb|AW756337.1|AW756337
genomic: TGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGgtctctaata ... ttattaacagCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGAAAGTTTGTTGCCCAGGGA
EST: AGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTG CTGTATCTGGAATTTTTGGAGAAGTTTGAGAGAAAGTTTGTTGCCCAGGGAEST: gi|15813509|gb|BI785784.1|BI785784
genomic: AGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGgtctctaata ... ttattaacagCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGAAAGTTTGTTGCCCAGGGA
EST: AGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTG CTGTATCTGGAATTTTTGGAGAAGTTTGAGAGAAAGTTTGTTGCCCAGGGAEST: gi|7685559|gb|AW756207.1|AW756207
genomic: AGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGgtctctaata ... ttattaacagCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGAAAGTTTGTTGCCCAGGGA
EST: AGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTG CTGTATCTGGAATTTTTGGAGAAGTTTGAGAGAAAGTTTGTTGCCCAGGGAEST: gi|16283344|gb|BI945501.1|BI945501
genomic: AGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGgtctctaata ... ttattaacagCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGAAAGTTTGTTGCCCAGGGA
EST: AGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTG CTGTATCTGGAATTTTTGGAGAAGTTTGAGAGAAAGTTTGTTGCCCAGGGAEST: gi|16283207|gb|BI945427.1|BI945427
genomic: AGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGgtctctaata ... ttattaacagCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGAAAGTTTGTTGCCCAGGGA
EST: AGGCAATGAAAGCAGTGCTTGGAGAAGAAGCACTTTCATCTGAGGACCTG CTGTATCTGGCAATTTTTG-AGAAGTTTGAGAGAAAAGTT-GTGGCCCAGGEST: gi|16106409|gb|BI894149.1|BI894149
genomic: AGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGgtctctaata ... ttattaacagCTGTATCTGG-AATTTTTGGAGAAGTTTGAGAGAAA-GTTTGTTGCCCAGG
EST: GAAGAAGCACTTTCATCTGAGGACCTG CTGTATCTGGAATTTTTGGAGAAGTTTGAGAGAAAGTTTGTTGCCCAGGGAEST: gi|7686714|gb|AW757362.1|AW757362
genomic: GAAGAAGCACTTTCATCTGAGGACCTGgtctctaata ... ttattaacagCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGAAAGTTTGTTGCCCAGGGA
EST: AGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTG CTGTATCTGGAATTTTTGGAGAAGTTTGAGAGAAAGTTTGTTGCCCAGGGA
genomic: AGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGgtctctaata ... ttattaacagCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGAAAGTTTGTTGCCCAGGGA
gaaattgcccttgaagtgatattaatggaactcttttccccccttttattaacagCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGAAAGTTTGTTGCCCAGGGAGCTTATGACACCCGCAATATATTCCAGTCACTAGATCTTGCATGGACTT
tattaat putative branch site (score: 2)
ctcttttccccccttt putative PPT
ttttattaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctctaataactttctatcttaataagtactatattttgtttcttaatgtgaaattgcccttgaagtgatattaatggaactcttttccccccttttattaacagCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGAAAGTTTGTTGCCCAGGGAGCTTATGACACCCGCAATATATTCCAGTCACTAGATCTTGCATGGACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA