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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttccattcattgctatgatttatgatttcataatcccaaactgtttttttcttgttgaatgcctcatggatgccaactgttttggcttttgaatgtttctatgcagTACTTGGCTTGCCATATGATCATCCATTGGATATTTGGTCTGTAGGTTGTTGTTTGTATGAGTTGTATATAGGGAAGGTTCTTTTCCCAGGTCTTACAAA

Basic information

species Glycine max
transcript GLYMA10G42220.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42220.1 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os03g50230.1 (Oryza sativa), 3'ss of exon 10
----------------------------------gtaagttccattcattgctatgatttatgatttcataatc-----ccaaactgtttttttcttgttgaatgcctc--------atggatgccaactgttttggcttttgaatgtttcta-tgcagTACTTGGCTTGCCATATGATCATCCATTGGATATTTGGTCTGTAGGTTGTTGTTTGTATGAGTTGTATATAGGGAAGGTTCTTTTCCCAGGTCTTACAAA-
                                     |  |   || | | | |   | | |  |||   | ||     | ||||   |    |||| || ||||| |         |||| |  ||      || |   ||   ||||  |  |||||| ||||| ||||| |||||||||||| ||||||| ||||| |  || || || || | |||  | || | ||| ||  |  | ||    |||   || || 
gtgagttacatacttgttcagtgttccttatttgactatctttcttgacttcgacactgttttcttttgcagtcaaactcaaaacaaatcccctctttttcaatgcttggtttcttaatggtttgcagacagattagtgatttcttgttcttcctgcagTTCTTGGGTTGCCTTATGATCATCCACTGGATATGTGGTCAGCTGGGTGCTGCTTATCTGAACT-TAAACAGGAAAAATCTTATTTGATGGTTCAACGAAC

upper sequence: GLYMA10G42220.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv01s0011g03350.t01 (Vitis vinifera), 3'ss of exon 9
gtaagttccattc-------attgctatgatttat--gatttcataatcccaaactgtttttttcttgttgaatgcctcat-------------ggatgccaactgtt-------ttggcttttgaatgtttc--tatgcagTACTTGGCTTGCCATATGATCATCCATTGGATATTTGGTCTGTAGGTTGTTGTTTGTATGAGTTGTATATAGGGAAGGTTCTTTTCCCAGGTCTTACAAA
|||||| ||||||       ||  |  |||||| |  ||  | || |    || ||  |||  |   || |  ||||  ||             | ||||   || ||       || |  | | | | ||||  | |||||| || |||||||| ||||| |||||  |||||||||||||||| |||||||||||||||||| | ||||  || || |||||||| || |||| | ||||
gtaagtcccattctcgaaccatcccgttgatttgtttgaaatgattaatataatcttctttagttaggtagtttgccaaataattatttttggagaatgctgtctcttaaatcatttagtctctaattctttccttctgcagTTCTAGGCTTGCCTTATGACCATCCCATGGATATTTGGTCTGTTGGTTGTTGTTTGTATGAGCTTTATACGGGAAAAGTTCTTTTTCCGGGTCCTTCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6913830|gb|AW395360.1|AW395360
EST:     TGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAA                         TACTTGGCTTGCCATATGATCATCCATTTGATATT
genomic: TGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAAgtaagttcca ... ttctatgcagTACTTGGCTTGCCATATGATCATCCATTGGATATT
EST: gi|254315911|gb|GR825720.1|GR825720
EST:     TGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAA                         TACTTGGCTTGCCATATGATCATCCATTGGATATTTGGTCTGTAGGTTGTT
genomic: TGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCGGAAATAAgtaagttcca ... ttctatgcagTACTTGGCTTGCCATATGATCATCCATTGGATATTTGGTCTGTAGGTTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttgaatgcctcatggatgccaactgttttggcttttgaatgtttctatgcagTACTTGGCTTGCCATATGATCATCCATTGGATATTTGGTCTGTAGGTTGTTGTTTGTATGAGTTGTATATAGGGAAGGTTCTTTTCCCAGGTCTTACAAA
                                          tgtttct  CT-rich tract
                                   ttttgaat  TA-rich tract