1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...cattataattttacctgttgtgttgatgtatgctatgactgataacattgtttattgtgattatctatatatattgctaattcatgactatctcatgcagCTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTGCATGCGTTAAGCATTTACCAACCTTATGTATGGGAGTATTCAAGGTTGA
species | Glycine max |
transcript | GLYMA10G41920.2 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ATGATTATGCACATTGCATTGTGGATTCTCTAGAGAATATCACACATTCT CTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTGEST: gi|254327577|gb|GR837186.1|GR837186
genomic: ATGATTATGCACATTGCATTGTGGATTCTCTAGAGAATATCACACATTCTgtaagttgtc ... tctcatgcagCTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTG
EST: ATGATTATGCACATTGCATTGTGGATTCTCTAGAGAATATCACACATTCT CTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTG
genomic: ATGATTATGCACATTGCATTGTGGATTCTCTAGAGAATATCACACATTCTgtaagttgtc ... tctcatgcagCTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTG
cattgtttattgtgattatctatatatattgctaattcatgactatctcatgcagCTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTGCATGCGTTAAGCATTTACCAACCTTATGTATGGGAGTATTCAAGGTTGA
tgctaat putative branch site (score: 2)
ctatctc putative PPT
tttattgtgattatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattataattttacctgttgtgttgatgtatgctatgactgataacattgtttattgtgattatctatatatattgctaattcatgactatctcatgcagCTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTGCATGCGTTAAGCATTTACCAACCTTATGTATGGGAGTATTCAAGGTTGA
- - - - - - -cctgttg
- - - - - - - - - - tgttgat
- - - - - - - - - - - - - -gtatgct
- - - - - - - - - - - - - - - - - atgactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgac