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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cattataattttacctgttgtgttgatgtatgctatgactgataacattgtttattgtgattatctatatatattgctaattcatgactatctcatgcagCTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTGCATGCGTTAAGCATTTACCAACCTTATGTATGGGAGTATTCAAGGTTGA

Basic information

species Glycine max
transcript GLYMA10G41920.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41920.2 (Glycine max), 3'ss of exon 14
lower sequence: Vv15s0021g01230.t01 (Vitis vinifera), 3'ss of exon 14
-----cattataattttacctgttgtgttgatgtatgctatgactgataacattgtttattgtgattatc-tatatatattgctaattcatgactatctcatgcagCTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTGCATGCGTTAAGCATTTACCAACCTTATGTATGGGAGTATTCAAGGTTGA
     |   ||    | ||   ||   |   || ||| | |  ||  |||  |    | |     || || | |||  ||  ||  || |     ||||  ||||||| || || ||||||||||||||||| ||||| || ||||| ||||| || |||| |||  |  ||||||| || ||||| |||||||| ||  ||||||
ttttcctccatcggatgactatttccttacctgcatgttttt-cttttaaattgaaatgtgacatttgtcatttatccatctctggttaa-----atcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTACATGTGTTGGGTCTTTACCATCCCTATGTGTGGGAGTACTCGCGGTTGA

upper sequence: GLYMA10G41920.2 (Glycine max), 3'ss of exon 14
lower sequence: Vv01s0011g03740.t01 (Vitis vinifera), 3'ss of exon 14
cattataattttacctgttgtgttgatgtatgctatgactgataacattgttta--ttgtgat-tatctatatatattgctaattcatgactatctcatgcagCTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTGCATGCGTTAAGCATTTACCAACCTTATGTATGGGAGTATTCAAGGTTGA
|||| |      | |  || ||| || |     | ||| |    |  |   | |  |||| || |  |   || |||| | | ||   |  ||| | |||||||| ||||||||||||||||| ||||| ||||| |||||||| |||||| |  ||||  |  || |||||||||||||||| ||||| || ||| ||||||
cattcttgaca-atcaattttgt-gaagctccttttgagtttgcatttgaatgaacttgtaatatgacgtcatttatt-caactttcggtgtattttatgcagCTATGTACACTTGAATTTGAAACACGCCGTGCTTCATACTACTGGTTGATAGATGCACTTGGCCTTTACCAACCTTATGTCTGGGAATACTCACGGTTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31561586|gb|CD487424.1|CD487424
EST:     ATGATTATGCACATTGCATTGTGGATTCTCTAGAGAATATCACACATTCT                         CTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTG
genomic: ATGATTATGCACATTGCATTGTGGATTCTCTAGAGAATATCACACATTCTgtaagttgtc ... tctcatgcagCTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTG
EST: gi|254327577|gb|GR837186.1|GR837186
EST:     ATGATTATGCACATTGCATTGTGGATTCTCTAGAGAATATCACACATTCT                         CTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTG
genomic: ATGATTATGCACATTGCATTGTGGATTCTCTAGAGAATATCACACATTCTgtaagttgtc ... tctcatgcagCTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattgtttattgtgattatctatatatattgctaattcatgactatctcatgcagCTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTGCATGCGTTAAGCATTTACCAACCTTATGTATGGGAGTATTCAAGGTTGA
                             tgctaat  putative branch site (score: 2)
                                          ctatctc  putative PPT
     tttattgtgattatct  TA-rich tract