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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgaaatttgtgcacacatttaggtattcatcattgtaaaatagaagtgaagtgccattattctgtattttaattgcagGGTCTTGCTCGATCAATGCCAACAAGCGGTGCTCTGGACCGTGTTGCTAAAAAATTGAACCTCCCTTTCTTTGAG

Basic information

species Glycine max
transcript GLYMA10G38590.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38590.1 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os10g11140.2 (Oryza sativa), 3'ss of exon 14
-----------------gttgaaatttgtgcacacatttaggtattcatcattgtaaaatagaagtgaagtgccattattctgtattttaattgcagGGTCTTGCTCGATCAATGCCAACAAGCGGTGCTCTGGACCGTGTTGCTAAAAAATTGAACCTCCCTTTCTTTGAG
                  ||  ||| | |    | ||   | ||||   | |  | ||| | |||     |  | ||||  |  ||  |   | |||||||||||| ||||||||||||| || |||||||| || ||||| ||| | ||||||||  | || |||||||||
gtaatgagatgttacacattataatgtttttctaaata-ggatattagac-tcatcaaagacaagaatgatctc-ttatgtttgatactttcttcagGGTCTTGCTAGATCAATGCCAACGAGTGGTGCTCTTGATCGTGTAGCTGATAAATTGAATGTTCCGTTCTTTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22541844|gb|BU091687.1|BU091687
EST:     TTGCAGCCAATGCAAGAGAAGCGATTCCATACTTCAAGAACGGTGTTAAG                         GGTCTTGCTCGATCAATTCCAACAAGCGGTGCTCTGGACCGTGTTGCTAAA
genomic: TTGCAGCCAATGCAAGAGAAGCGATTCCATACTTCAAGAACGGTGTTAAGgttgaaattt ... ttaattgcagGGTCTTGCTCGATCAATGCCAACAAGCGGTGCTCTGGACCGTGTTGCTAAA
EST: gi|15203242|gb|BI426010.1|BI426010
EST:     TTGCAGCCAATGCAAGAGAAGCGATTCCATACTTCAAGAACGGTGTTAAG                         GGTCTTGCTCGATCAATGCCAACAAGCGGTGCTCTGGACCGTGTTGCTAAA
genomic: TTGCAGCCAATGCAAGAGAAGCGATTCCATACTTCAAGAACGGTGTTAAGgttgaaattt ... ttaattgcagGGTCTTGCTCGATCAATGCCAACAAGCGGTGCTCTGGACCGTGTTGCTAAA
EST: gi|120494261|gb|EH222428.1|EH222428
EST:     TTGCAGCCAATGCAAGAGAAGCGATTCCATACTTCAAGAACGGTGTTAAG                         GGTCTTGCTCGATCAATGCCAACAAGCGGTGCTCTGGACCGTGTTGCTAAA
genomic: TTGCAGCCAATGCAAGAGAAGCGATTCCATACTTCAAGAACGGTGTTAAGgttgaaattt ... ttaattgcagGGTCTTGCTCGATCAATGCCAACAAGCGGTGCTCTGGACCGTGTTGCTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattcatcattgtaaaatagaagtgaagtgccattattctgtattttaattgcagGGTCTTGCTCGATCAATGCCAACAAGCGGTGCTCTGGACCGTGTTGCTAAAAAATTGAACCTCCCTTTCTTTGAG
                                           ttttaat  putative branch site (score: 3)
                                attattctgtatttta  TA-rich tract