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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcggtttatattttacttaatatctgcttttttttatattataatttccttgaaataataatattagccaaaaaatgttgcaagtataaaattctgatcattgttttctttaaaacagATAGCTACACGAATGGTCATTCAGTATGGGTGGGGACCTGATGACAGTCCTGCAATATATTACCGTAGTAATGCG

Basic information

species Glycine max
transcript GLYMA10G30720.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30720.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv14s0030g02190.t01 (Vitis vinifera), 3'ss of exon 14
-----gtcggtttatattttacttaatatc--tgcttttttttatattataatttccttgaaataataatattagccaaaaaatgttgcaagtataaaattctgatcattgttttct--ttaaaacagATAGCTACACGAATGGTCATTCAGTATGGGTGGGGACCTGATGACAGTCCTGCAATATATTACCGTAGTAATGCG
     |    | | || | | |  | |  |  || |  ||  | | ||||   |  |      ||| ||||  |      |  | | ||     | ||   ||||| | | ||| |   |||  |||||||||||| || ||||| || ||| |||| ||||| |||||||||||||||||| | || |||  ||| ||||||
gtattgattatctgtactgtccacattggcaatgttcattgatctgttattggtagcccattttaaaaataagaagtgccatttttagctttgcttaa---ctgattactctttgcaaattactacagATAGCTACGCGGATGGTGATCCAGCATGGATGGGGCCCTGATGACAGTCCTGCAGTTTACTACTATAGCAATGCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23731005|gb|BU763612.1|BU763612
EST:     TTGGGGAAGAAAACTTACTTTCTACATCTGAGATACAGCAGGCACAAGAG                         ATAGCTACACGAATGGTCATTCAGTATGGGTGGGGACCTGATGACAGTCCT
genomic: TTGGGGAAGAAAACTTACTTTCTACATCTGAGATACAGCAGGCACAAGAGgtcggtttat ... tttaaaacagATAGCTACACGAATGGTCATTCAGTATGGGTGGGGACCTGATGACAGTCCT
EST: gi|7041885|gb|AW471779.1|AW471779
EST:     TTGGGGAAGAAAACTTACTTTCTACATCTGAGATACAGCAGGCACAAGAG                         ATAGCTACACGAATGGTCATTCAGTATGGGTGGGGACCTGATGACAGTCCT
genomic: TTGGGGAAGAAAACTTACTTTCTACATCTGAGATACAGCAGGCACAAGAGgtcggtttat ... tttaaaacagATAGCTACACGAATGGTCATTCAGTATGGGTGGGGACCTGATGACAGTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagccaaaaaatgttgcaagtataaaattctgatcattgttttctttaaaacagATAGCTACACGAATGGTCATTCAGTATGGGTGGGGACCTGATGACAGTCCTGCAATATATTACCGTAGTAATGCG
                            ttctgat  putative branch site (score: 3)
                                  tcattgttttcttt  CT-rich tract
                                    attgttttctttaaaa  TA-rich tract