1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...cttatcattcataaaattttcttcaaatttgatgtggttaaatattatataaatatttctttaaagatggcactgacacaacttaattacaatgtctcagGTGTTTGGTCTGTTGACTAAGCCACTCATAAGGCTTTTACTGCCCCATACTCCACATCATAAAGAATCAAGCATCACGATAATCACAGATCCATCTACTC
species | Glycine max |
transcript | GLYMA10G30020.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTG GTGTTTGGTCTGTTGACTAAGCCACTCATAAGGCTTTTACTGCCCCATACTEST: gi|151398797|gb|EV268668.1|EV268668
genomic: ATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTGgtaagatatt ... aatgtctcagGTGTTTGGTCTGTTGACTAAGCCACTCATAAGGCTTTTACTGCCCCATACT
EST: ATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTG GTGTTTGGTCTGTTGACTAAGCCACTCATAAGGCTTTTACTGCCCCATACTEST: gi|22541751|gb|BU091594.1|BU091594
genomic: ATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTGgtaagatatt ... aatgtctcagGTGTTTGGTCTGTTGACTAAGCCACTCATAAGGCTTTTACTGCCCCATACT
EST: ATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTG GTGTTTGGTCTGTTGACTAAGCCACTCATAAGGCTTNTACTGCCCCATACTEST: gi|12496314|gb|BG047002.1|BG047002
genomic: ATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTGgtaagatatt ... aatgtctcagGTGTTTGGTCTGTTGACTAAGCCACTCATAAGGCTTTTACTGCCCCATACT
EST: ATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTG GTGTTTGGGTCTG-TGACTAAGCCACTCATAAGGCTTTTACTGCCCCATAC
genomic: ATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTGgtaagatatt ... aatgtctcagGTGTTT-GGTCTGTTGACTAAGCCACTCATAAGGCTTTTACTGCCCCATAC
tatataaatatttctttaaagatggcactgacacaacttaattacaatgtctcagGTGTTTGGTCTGTTGACTAAGCCACTCATAAGGCTTTTACTGCCCCATACTCCACATCATAAAGAATCAAGCATCACGATAATCACAGATCCATCTACTC
aaatatttctttaaag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttatcattcataaaattttcttcaaatttgatgtggttaaatattatataaatatttctttaaagatggcactgacacaacttaattacaatgtctcagGTGTTTGGTCTGTTGACTAAGCCACTCATAAGGCTTTTACTGCCCCATACTCCACATCATAAAGAATCAAGCATCACGATAATCACAGATCCATCTACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - -cattcat
- - - - - - - - - - - - - - - gatgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgacac