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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaatttgtttcttgactagtacttcccctcatacattgctgttgatacattattaatgatcattatgactgcagGTTGTGGAAGCTGGCGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAG

Basic information

species Glycine max
transcript GLYMA10G27810.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G27810.1 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os01g21820.1 (Oryza sativa), 3'ss of exon 12
gtcaatttgtttcttgactagtacttcccc----tcatacattgctgttga----tacattattaatg--atcattatgactg---cagGTTGTGGAAGCTGGCGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAG
|| |   ||     |||  || |  |   |    |||| ||||| | ||||     |||  | | |||  ||  || | | |    |||||  |   ||| || ||||| ||||||||||| ||||| ||||||||||| ||  ||||||||||||||
gttataatgcacaatgaggaggatatttacatattcattcattgttattgaagtgcacagaaatcatggtattgttgtcatttgttcagGTCATTTCAGCAGGTGGACTTCATGTAGTAGGAACAGAACGTCATGAATCTCGCAGAATTGATAATCAG

upper sequence: GLYMA10G27810.1 (Glycine max), 3'ss of exon 14
lower sequence: GRMZM5G880102_T01 (Zea mays), 3'ss of exon 2
gtcaatttgtttcttgactagtacttcc----cctcatacattgctgttga------tacattattaa--tgatcattatgactgcagGTTGTGGAAGCTGGCGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAG
|| |  | |  |  | |     || |      |   ||   |||||||| |         | | || |  |||||| | | | | |||||  |   ||  || || || || |||||||| |||||||| |||||||||||  ||||||| ||||||
gttatatggcattataaaagaaacattgatagctctatctgttgctgttcagtgtagcgtagtgttcacgtgatcaattttatt-cagGTCATTACAGTAGGTGGGCTTCACGTAGTAGGAACAGAGCGCCATGAATCACGCAGAATTGACAATCAG

upper sequence: GLYMA10G27810.1 (Glycine max), 3'ss of exon 14
lower sequence: AT4G01800.1 (Arabidopsis thaliana), 3'ss of exon 13
gtcaatt-tgtttc--ttgactagtactt---cccctcatacattgctgttgatacattattaatgatcatta-tgactgcagGTTGTGGAAGCTGGCGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAG
|| | || |||| |    ||  ||||  |    | ||   |  |  |||||| |  ||  || ||  || | |    |||||||| ||||||||||| ||||| || || || || |||||||| ||||||||||||||||| || ||||||
gttagttctgttacagcagagcagtatgtgaatctctgtcaagtgtctgttgttg-atcgtttattctcctgaactgctgcagGTGGTGGAAGCTGGTGGACTTCACGTGGTGGGGACAGAGCGGCATGAATCACGTCGAATAGACAATCAG

upper sequence: GLYMA10G27810.1 (Glycine max), 3'ss of exon 14
lower sequence: EFJ08380 (Selaginella moellendorffii), 3'ss of exon 13
gtcaatttgtttcttgactagtacttcccctcatacattgctgttgatacattattaatgatcat--tatgactgcagGTTGTGGAAGCTGGCGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAG
                              | | |       |||  | ||| |||  |  ||||  | |   |||||||||| |  || || || || || ||  ||||||||||||| || ||||||||  ||||||||||||||
-----------------------------gttagaagccaaagtt--ttcatgatttgtcctcatagttttcttgcagGTTGTTGCTGCAGGTGGCCTTCACGTGATAGGCACAGAGCGCCACGAATCACGAAGAATTGATAATCAG

upper sequence: GLYMA10G27810.1 (Glycine max), 3'ss of exon 14
lower sequence: EFJ15249 (Selaginella moellendorffii), 3'ss of exon 13
gtcaatttgtttcttgactagtacttcccctcatacattgctgttgatacattattaatgatcat--tatgactgcagGTTGTGGAAGCTGGCGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAG
                              | | | |     |||  | ||| |||  |  ||||  | |   |||||||||| |  || || || || || ||  ||||||||||||| |||||||||||  ||||||||||||||
-----------------------------gttagaaacgaaagtt--ttcatgatttgtcctcatagttttcttgcagGTTGTTGCTGCAGGTGGCCTTCACGTGATAGGCACAGAGCGCCATGAATCACGAAGAATTGATAATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttcccctcatacattgctgttgatacattattaatgatcattatgactgcagGTTGTGGAAGCTGGCGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAG
                               tattaat  putative branch site (score: 2)
                         atacattattaatgat  TA-rich tract