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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatatcaatgctaatagttcaatggttagttttacaatctcaaatcagatccgactataatttgttctcgcattgcagGTGGTGGTGTTGCTCTTCTATATGCGTCAAAAGAGTTGGATAAACTTCAAACTGCTAACTTTGATCAGAAGATTGGTGTCCAGATTATCCAAAATGCTTT

Basic information

species Glycine max
transcript GLYMA10G25630.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G25630.1 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os03g04970.1 (Oryza sativa), 3'ss of exon 14
----------------gtaaaatatcaatgctaatagttcaatggttagttttacaatctcaaatcagatccgactataatttgttctcgcat-tgcagGTGGTGGTGTTGCTCTTCTATATGCGTCAAAAGAGTTGGATAAACTTCAAACTGCTAACTTTGATCAGAAGATTGGTGTCCAGATTATCCAAAATGCTTT
                 |   || | | |      |||| | |  ||||    | |    ||   |||| |  |  |||  |  ||||    |  | ||||||||| ||||| ||||| ||||| ||||||||  |||||||| | || ||||| |||||||| || ||||||||||||||||| || |||||||||||
gtactgtatgtcatcgctgctattttattttctgcagtttacta-ttagcagcatatcaccattgcagagc--atcatatctgattctaatttacgtagGTGGTGGAGTTGCCCTTCTGTATGCATCAAAAGACCTGGATAAATTGCAGACTGCGAACTTTGACCAAAAGATTGGTGTCCAGATCATTCAAAATGCTTT

upper sequence: GLYMA10G25630.1 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os10g32550.1 (Oryza sativa), 3'ss of exon 14
-----------------------------------gtaaaatatcaatgc----taatagttcaatggttagttttacaat------ctcaaatcagatccgactataatttgttctcgcattgcagGTGGTGGTGTTGCTCTTCTATATGCGTCAAAAGAGTTGGATAAACTTCAAACTGCTAACTTTGATCAGAAGATTGGTGTCCAGATTATCCAAAATGCTTT
                                    ||   | ||  ||     || | ||||| |    |  ||| || |      | ||| |  | |   |  | |  ||    |  || | ||||||| |||||||| ||||| ||||| ||||| ||| |||||||| | |  ||||||||||||||||| ||||||||||| || || || || ||||||||
gtatgcagttgctccacttcagtagatttctttcaatatgttttccttgtaatgtacttgttcagtttgcatctttgcattattatgcccaagtatgctgacatgacatctttgcattacaatacagGTGGAGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGACTGCTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTT

upper sequence: GLYMA10G25630.1 (Glycine max), 3'ss of exon 14
lower sequence: GRMZM2G111477_T01 (Zea mays), 3'ss of exon 2
-----------------------------gtaaaatatcaatgctaatagttcaatggttagttttac-aatctc-----aaatcag---atccgactataatttgttctcgcat-tgcagGTGGTGGTGTTGCTCTTCTATATGCGTCAAAAGAGTTGGATAAACTTCAAACTGCTAACTTTGATCAGAAGATTGGTGTCCAGATTATCCAAAATGCTTT
                                  || |  ||||| ||         |||| |  |||  |||||       |||||     | ||   | || | |  | | || |||||||||||||||||||||||| ||||| || || ||| | |||||| | || || || ||||| ||||||||||||||||| || || || || ||||||||
gtaatgtatcatttgaatatttgatgttcacgggatgttcatgctgatttcctttgtgttattcctactgatctcctgttgcatcagtatgcctgatagtcatctttaattgtatatgcagGTGGTGGTGTTGCTCTTCTCTATGCATCGAAGGAGCTTGATAAATTGCAGACAGCGAACTTCGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTT

upper sequence: GLYMA10G25630.1 (Glycine max), 3'ss of exon 14
lower sequence: GRMZM2G416120_T01 (Zea mays), 3'ss of exon 13
---------------------------------------------------------------------------gtaaaatatcaatgctaatagtt-caatggttagttttacaatctcaaatcagatccgactat-aatttgttctcgcat-tgcagGTGGTGGTGTTGCTCTTCTATATGCGTCAAAAGAGTTGGATAAACTTCAAACTGCTAACTTTGATCAGAAGATTGGTGTCCAGATTATCCAAAATGCTTT
                                                                            |     |||| |  |  |  |    ||   |  |||     |     |  |   |||    | ||| | |  | |  | |||||||||||||||||||||||| ||||| || || ||| | |||||  | || || || || |||||||||||||||||||| || || || || ||||||||
gtaatgtatcaattaaaatttcatggggggggggtgtttatgctgatttcctgtgttatttgctcctactgattcctgttgcatcagtatttgtgttagttattcctgatttcctgttgcgtcagtatgcccgggagtcaatctttaattgtgtatgcagGTGGTGGTGTTGCTCTTCTCTATGCATCGAAGGAGCTCGATAAGTTGCAGACAGCAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTT

upper sequence: GLYMA10G25630.1 (Glycine max), 3'ss of exon 14
lower sequence: AT3G23990.1 (Arabidopsis thaliana), 3'ss of exon 12
gtaaaa---tatcaatgctaatagttcaatggt-tagttttacaatctcaaatcagatccgactataatttgttctcgca-ttgcagGTGGTGGTGTTGCTCTTCTATATGCGTCAAAAGAGTTGGATAAACTTCAAACTGCTAACTTTGATCAGAAGATTGGTGTCCAGATTATCCAAAATGCTTT
|||      |  || ||   |    ||  || | ||||  || ||  |      |  | | |    ||    |     || ||||||| || ||||| ||||||||||| ||  ||| ||||||||| ||||||| ||| || |||||||| ||||||||||||||||||||||| || || || ||
gtatgtctcttccagtgaggaagactctttgatatagtgctaaaaagtttg-ctatgtgctaaagaaacaaatcaaaacacttgcagGAGGAGGTGTGGCTCTTCTATACGCAGCAAGAGAGTTGGAAAAACTTCCAACAGCCAACTTTGACCAGAAGATTGGTGTCCAGATTATTCAGAACGCATT

upper sequence: GLYMA10G25630.1 (Glycine max), 3'ss of exon 14
lower sequence: PP1S149_289V6.1 (Physcomitrella patens), 3'ss of exon 13
-------------gtaaaatatcaatgctaatagttcaatggttag----ttttacaatctcaaatcagatccgactat-aatttgttctcgcattgcagGTGGTGGTGTTGCTCTTCTATATGCGTCAAAAGAGTTGGATAAACTTCAAACTGCTAACTTTGATCAGAAGATTGGTGTCCAGATTATCCAAAATGCTTT
             ||| | | |  | |  |     | ||| |  |      | |    | ||   |   |    | | | |||||| |   |     ||||||||||||| |||||| | ||||| ||   |||| |||| ||| |||||||||| |||||||| |||||||| || || || || ||||||||||||||
taaatttatatacgtagattttagaaggcacgtcatgaattgcgaagcccctctggtgtttcgtctggtaatgaattttcaatttgattgggtggaacagGTGGTGGTGTGGCTCTTTTGTATGCTTCTCGAGAGCTGGAGAAAGTTCAAACTGCGAACTTTGACCAGAAGATCGGAGTGCAAATCATCCAAAATGCTTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193546035|gb|FK504388.1|FK504388
EST:     AGATGCCTTAAATGCAACTAAGGCTGCTGTAGAGGGAGGCATTGTATCAG                         GTGGTGGTGTTGCTCTTCTATATGCGTCAAAAGNGTTGGATAAACTTCAAA
genomic: AGATGCCTTAAATGCAACTAAGGCTGCTGTAGAGGAAGGCATTGTATCAGgtaaaatatc ... cgcattgcagGTGGTGGTGTTGCTCTTCTATATGCGTCAAAAGAGTTGGATAAACTTCAAA
EST: gi|16282135|gb|BI944856.1|BI944856
EST:     AGATGCCTTAAATGCAACTAAGGCTGCTGTAGAGGAAGGCATTGTATCAG                         GTGGTGGTGTTGCTCTTCTATATGCGTCAAAAGAGTTGGATAAACTTCAAA
genomic: AGATGCCTTAAATGCAACTAAGGCTGCTGTAGAGGAAGGCATTGTATCAGgtaaaatatc ... cgcattgcagGTGGTGGTGTTGCTCTTCTATATGCGTCAAAAGAGTTGGATAAACTTCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttagttttacaatctcaaatcagatccgactataatttgttctcgcattgcagGTGGTGGTGTTGCTCTTCTATATGCGTCAAAAGAGTTGGATAAACTTCAAACTGCTAACTTTGATCAGAAGATTGGTGTCCAGATTATCCAAAATGCTTT
                                     tttgttctc  CT-rich tract
                                tataatttgtt  TA-rich tract