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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgttgacttatttgaaacaaatctcaaatgatgccaaataggtttaagtccctccgctaatcactgtgtttcacttttaattcaccttgcagTCACTGATGCTCGTCACATCCTTAAACCCA

Basic information

species Glycine max
transcript GLYMA10G02040.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254343541|gb|GR857297.1|GR857297
EST:     TGAGAGGCATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAG                         TCACTGATGCTCGTCACATCCTTAAACCCA
genomic: TGAGAGGCATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGgtgagttgtt ... caccttgcagTCACTGATGCTCGTCACATCCTTAAACCCA
EST: gi|254343540|gb|GR857296.1|GR857296
EST:     TGAGAGGCATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAG                         TCACTGATGCTCGTCACATCCTTAAACCCA
genomic: TGAGAGGCATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGgtgagttgtt ... caccttgcagTCACTGATGCTCGTCACATCCTTAAACCCA
EST: gi|58014928|gb|CX701670.1|CX701670
EST:     TGAGAGGCATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAG                         TCACTGATGCTCGTCACATCCTTAAACCCA
genomic: TGAGAGGCATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGgtgagttgtt ... caccttgcagTCACTGATGCTCGTCACATCCTTAAACCCA
EST: gi|209708984|gb|BW653498.1|BW653498
EST:     TGAGAGGCATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAG                         TCACTGATGCTCGTCACATCCTTAAACCCA
genomic: TGAGAGGCATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGgtgagttgtt ... caccttgcagTCACTGATGCTCGTCACATCCTTAAACCCA
EST: gi|193401454|gb|FK369277.1|FK369277
EST:     TGAGAGGCATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAG                         TCACTGATGCTCGTCACATCCTTAAACCCA
genomic: TGAGAGGCATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGgtgagttgtt ... caccttgcagTCACTGATGCTCGTCACATCCTTAAACCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataggtttaagtccctccgctaatcactgtgtttcacttttaattcaccttgcagTCACTGATGCTCGTCACATCCTTAAACCCA
                                     ttttaat  putative branch site (score: 3)
                                           ttcacctt  CT-rich tract
                               tttcacttttaatt  TA-rich tract