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gtacattctgcattgctttaatgatgattcacatcttttgtcttgaggatcttttttggatgtgttttccacttttttttctttcataattgtggtagactcccctttcctttatagaactctccctgtccatccaatgagtggagaaagaactatttatatcttatggtgaatttgtctgttatgcagTGGGCTGAGGTGCTGTCTGCAGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAG
species | Glycine max |
transcript | GLYMA09G33490.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GTGGATATGCAGCTGGATACTATAGTTACAAG TGGGCTGAGGTGCTGTCTGCAGATGCTTTCTCTGCATTTGAGGATGCTGGAEST: gi|17963650|gb|BM270397.1|BM270397
genomic: GTGGATATGCAGCTGGATACTATAGTTACAAGgtacattctg ... tgttatgcagTGGGCTGAGGTGCTGTCTGCAGATGCTTTCTCTGCATTTGAGGATGCTGGA
EST: GTGGATATGCAGCTGGATACTATAGTTACAAG TGGGCTGAGGTGCTGTCTGCAGATGCTTTCTCTGCATTTGAGGATGCTGGAEST: gi|193731702|gb|FK667544.1|FK667544
genomic: GTGGATATGCAGCTGGATACTATAGTTACAAGgtacattctg ... tgttatgcagTGGGCTGAGGTGCTGTCTGCAGATGCTTTCTCTGCATTTGAGGATGCTGGA
EST: GCTGGATACTATAGTTACAAG TGGGCTGAGGTGCTGTCTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGAEST: gi|193548022|gb|FK505191.1|FK505191
genomic: GCTGGATACTATAGTTACAAGgtacattctg ... tgttatgcagTGGGCTGAGGTGCTGTCTGCAGATGCTTTCTCTGCATTTGAGGATGCTGGA
EST: GCTGGATACTATAGTTACAAG TGGGCTGAGGTGCTGTCTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGAEST: gi|15589634|gb|BI674250.1|BI674250
genomic: GCTGGATACTATAGTTACAAGgtacattctg ... tgttatgcagTGGGCTGAGGTGCTGTCTGCAGATGCTTTCTCTGCATTTGAGGATGCTGGA
EST: GTGGATATGCAGCTGGATACTATAGTTACAAG TGGGCTGAGGTGCTGTCTGCAGATGCTTTCTCTGCATTTGAGGATGCTGGAEST: gi|193527255|gb|FK483409.1|FK483409
genomic: GTGGATATGCAGCTGGATACTATAGTTACAAGgtacattctg ... tgttatgcagTGGGCTGAGGTGCTGTCTGCAGATGCTTTCTCTGCATTTGAGGATGCTGGA
EST: GCTGGATACTATAGTTACAAG TGGGCTGAGGTGCTGTCTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGAEST: gi|254348574|gb|GR852253.1|GR852253
genomic: GCTGGATACTATAGTTACAAGgtacattctg ... tgttatgcagTGGGCTGAGGTGCTGTCTGCAGATGCTTTCTCTGCATTTGAGGATGCTGGA
EST: GTGGATATGCAGCTGGATACTATAGTTACAAG TGGGCTGAGGTGCTGTCTGCAGATGCTTTCTCTGCATTTGAGGATGCTGGAEST: gi|207715848|gb|GD697966.1|GD697966
genomic: GTGGATATGCAGCTGGATACTATAGTTACAAGgtacattctg ... tgttatgcagTGGGCTGAGGTGCTGTCTGCAGATGCTTTCTCTGCATTTGAGGATGCTGGA
EST: GTGGATATGCAGCTGGATACTATAGTTACAAG TGGGCTGAGGTGCTGTCTGCAGATGCTTTCTCTGCATTTGAGGATGCTGGAEST: gi|193624092|gb|FK573916.1|FK573916
genomic: GTGGATATGCAGCTGGATACTATAGTTACAAGgtacattctg ... tgttatgcagTGGGCTGAGGTGCTGTCTGCAGATGCTTTCTCTGCATTTGAGGATGCTGGA
EST: GCTGGATACTATTAGTTACAAG TGGGCTGAGGTGCTGTCTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGAEST: gi|21889700|gb|BQ742913.1|BQ742913
genomic: GCTGGATACTA-TAGTTACAAGgtacattctg ... tgttatgcagTGGGCTGAGGTGCTGTCTGCAGATGCTTTCTCTGCATTTGAGGATGCTGGA
EST: GTGGATATGCGGCTGGATACTATAGTTACAAG TGGGCTGAGGTGCTGTCTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGAEST: gi|193649185|gb|FK599794.1|FK599794
genomic: GTGGATATGCAGCTGGATACTATAGTTACAAGgtacattctg ... tgttatgcagTGGGCTGAGGTGCTGTCTGCAGATGCTTTCTCTGCATTTGAGGATGCTGGA
EST: GCTGGATACTATAGTTACAAG TGGGCTGAGGTGCTGTCTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGA
genomic: GCTGGATACTATAGTTACAAGgtacattctg ... tgttatgcagTGGGCTGAGGTGCTGTCTGCAGATGCTTTCTCTGCATTTGAGGATGCTGGA
caatgagtggagaaagaactatttatatcttatggtgaatttgtctgttatgcagTGGGCTGAGGTGCTGTCTGCAGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAG
tttgtct CT-rich tract
aaagaactatttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacattctgcattgctttaatgatgattcacatcttttgtcttgaggatcttttttggatgtgttttccacttttttttctttcataattgtggtagactcccctttcctttatagaactctccctgtccatccaatgagtggagaaagaactatttatatcttatggtgaatttgtctgttatgcagTGGGCTGAGGTGCTGTCTGCAGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA