1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gttcctaaatcttcaatatcctttgagtttgtgtttgttttatctggacactgttggtttgagttgctgagggttgctaagtgcttgaataaactaatatatagttgctgattaatttattttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCAGTCAGAGATTGCAAAGCTTCGCCATGATGTTGAGGAGTACGCAAAACA
species | Glycine max |
transcript | GLYMA09G33480.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCEST: gi|208149858|gb|GD949864.1|GD949864
genomic: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTC
EST: GATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCEST: gi|193392884|gb|FK359660.1|FK359660
genomic: GATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTC
EST: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GATCAAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTAEST: gi|208217259|gb|GE008655.1|GE008655
genomic: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAA-TTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTA
EST: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCAACAATTCAGTCATCTTCTTACTTTEST: gi|193330448|gb|FK292748.1|FK292748
genomic: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCA-CAATTCAGTCATCTTCTTACTTT
EST: AGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCEST: gi|207753907|gb|GD724303.1|GD724303
genomic: AGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTC
EST: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCEST: gi|193305610|gb|FK270967.1|FK270967
genomic: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTC
EST: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCEST: gi|193667699|gb|FK613031.1|FK613031
genomic: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTC
EST: TTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCEST: gi|208165351|gb|GD964459.1|GD964459
genomic: TTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTC
EST: TTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCEST: gi|193670163|gb|FK613197.1|FK613197
genomic: TTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTC
EST: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAGAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCEST: gi|208062781|gb|GD861069.1|GD861069
genomic: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTC
EST: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCEST: gi|208298055|gb|GE091030.1|GE091030
genomic: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTC
EST: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGEST: gi|193316691|gb|FK281931.1|FK281931
genomic: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGG
EST: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTAEST: gi|193364197|gb|FK331767.1|FK331767
genomic: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTA
EST: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GNTCAAAATTGAAGGACTTEST: gi|207716444|gb|GD699444.1|GD699444
genomic: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTT
EST: TTTTGATGCAGCTGTAGATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCEST: gi|207827493|gb|GD800730.1|GD800730
genomic: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTC
EST: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCEST: gi|208293963|gb|GE092564.1|GE092564
genomic: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTC
EST: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCEST: gi|193403630|gb|FK369884.1|FK369884
genomic: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTC
EST: TTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAAGAGACAAA-G GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTAEST: gi|208116968|gb|GD915838.1|GD915838
genomic: TTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCA-GAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTA
EST: AAGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCEST: gi|207847966|gb|GD817829.1|GD817829
genomic: AAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTC
EST: GATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCEST: gi|193396652|gb|FK364562.1|FK364562
genomic: GATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTC
EST: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GNTCAAA-TTGAAGGACTTCT-GGCCACAATTCAGTCATCTTCTTACEST: gi|193633764|gb|FK582412.1|FK582412
genomic: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTAC
EST: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCEST: gi|193433712|gb|FK400606.1|FK400606
genomic: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTC
EST: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCEST: gi|22931030|gb|BU548169.1|BU548169
genomic: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTC
EST: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCEST: gi|193667155|gb|FK610947.1|FK610947
genomic: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTC
EST: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GNTCAAAATTGAAGGACTTCT-GGCCACAATTCAGTCATEST: gi|193445447|gb|FK411628.1|FK411628
genomic: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCAT
EST: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCEST: gi|193519974|gb|FK472365.1|FK472365
genomic: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTC
EST: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCEST: gi|193543612|gb|FK502077.1|FK502077
genomic: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTC
EST: TTTGATGCAGCTGTTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCEST: gi|193381576|gb|FK348903.1|FK348903
genomic: TTTGATGCAGCTG-TAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTC
EST: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GNTCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTAEST: gi|208073638|gb|GD872791.1|GD872791
genomic: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTA
EST: GAAGATCAAGTCTAGTAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTEST: gi|208154360|gb|GD955413.1|GD955413
genomic: GAAGATCAAGTC-AG-AGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTT
EST: CAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCEST: gi|193538384|gb|FK496749.1|FK496749
genomic: CAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTC
EST: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCEST: gi|207799507|gb|GD769262.1|GD769262
genomic: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTC
EST: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCEST: gi|193565046|gb|FK517963.1|FK517963
genomic: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTC
EST: GATGCAGTCTTGTTAAATTTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCEST: gi|208043390|gb|GD840108.1|GD840108
genomic: GATGCAG-C-TG-TAAA-TTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTC
EST: GATGCAGTCTTGTTAAATTTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCEST: gi|193467306|gb|FK434379.1|FK434379
genomic: GATGCAG-C-TG-TAAA-TTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTC
EST: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAG GATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTC
genomic: TTTTGATGCAGCTGTAAATTTAGCTGTGAAGATCAAGTCAGAGACAAAAGgttcctaaat ... ttttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTC
tgctaagtgcttgaataaactaatatatagttgctgattaatttattttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCAGTCAGAGATTGCAAAGCTTCGCCATGATGTTGAGGAGTACGCAAAACA
tttatttt CT-rich tract
aataaactaatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcctaaatcttcaatatcctttgagtttgtgtttgttttatctggacactgttggtttgagttgctgagggttgctaagtgcttgaataaactaatatatagttgctgattaatttattttaatcagGATCAAAATTGAAGGACTTCTTGGCCACAATTCAGTCATCTTCTTACTTTCAGTCAGAGATTGCAAAGCTTCGCCATGATGTTGAGGAGTACGCAAAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG