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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctgattaattttattcttttatttttttctgtttcaacactgtaaatattgcttttgcatgaatgttagactgatttcttagttatctagGGCGGTCTTGATGATAGTGGTGCAGCATCTGTGAGAGCCATAATGCATTGGCAGTATCGAACCATTTGCCGAGGGCAGAATTCTATCATGCATAATCTTT

Basic information

species Glycine max
transcript GLYMA09G04620.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G04620.1 (Glycine max), 3'ss of exon 14
lower sequence: AT3G16785.1 (Arabidopsis thaliana), 3'ss of exon 14
gttctgattaatttta-ttcttttatttttttctgtttcaacactgtaaatattgcttttgcatgaatgttagactgatttcttagttatctagGGCGGTCTTGATGATAGTGGTGCAGCATCTGTGAGAGCCATAATGCATTGGCAGTATCGAACCATTTGCCGAGGGCAGAATTCTATCATGCATAATCTTT
       ||| |||    |     | | | |||||||| || |   |   |  |||  | |||    | ||| ||  |  | |  ||     |||| ||| |||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| | | |||| || || || ||  ||  ||||||||
------gttagtttcggctagaaaagtgtattctgtttaaaaagatttgctcctgcaat-gca-actttttaaaccaacgtatgtgtctggcagGGAGGTATTGACGACAGTGGTGCAGCATCTGTTAGAGCCATAATGCATTGGCAGTATCGAACCATATACAGAGGACATAACTCAATATTGACTAATCTTT

upper sequence: GLYMA09G04620.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 15
gttctgattaattttattcttttatttttttctgtttcaacactgtaaatattgcttttgcatgaatgttagactgatttcttagttatctagGGCGGTCTTGATGATAGTGGTGCAGCATCTGTGAGAGCCATAATGCATTGGCAGTATCGAACCATTTGCCGAGGGCAGAATTCTATCATGCATAATCTTT
        || | || ||  || | ||  ||    ||  | |    | | |||  ||||  ||   | ||    ||| ||   |       |||| ||| | |||||| |||| || |||||||| ||||||||||||||||||||||||||||| || ||||||||  | ||||| ||  | || |||||||
-------gtactattcttgattaagttccttgacatttgaaataaaagagatttgttttttat---ttttgtcttgaatttcaa------cagGGTGGTTTGGATGATGGTGGGGCGGCATCTGTAAGAGCCATAATGCATTGGCAGTATCGAACTATATGCCGAGGAAATAATTCAATATTACAAAATCTTT

upper sequence: GLYMA09G04620.1 (Glycine max), 3'ss of exon 14
lower sequence: EFJ21271 (Selaginella moellendorffii), 3'ss of exon 14
gttctgattaattttattcttttatttttttctgtttcaacactgtaaatattgcttttgcatgaatgttagactgatttcttagttatctagGGCGGTCTTGATGATAGTGGTGCAGCATCTGTGAGAGCCATAATGCATTGGCAGTATCGAACCATTTGCCGAGGGCAGAATTCTATCATGCATAATCTTT
                                      || | |  |||  | | |       ||   |||  |   |||   | ||   ||||| ||| | |||||||  || ||||||||||| |||||||| || |||||||| ||| ||||||| ||||| ||  |    ||  |  || |   |||  
------------------------------------gtaagattccaaac-tcgttaaatggcgacatttaagcatgttttccatttg--tagGGTGGTGTCGATGATACAGGAGCAGCATCTGTTAGAGCCATCATTCATTGGCAATATAGAACCATATGCCGTGGAAATTCGTCGTTGTTGAAGCGTCTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacactgtaaatattgcttttgcatgaatgttagactgatttcttagttatctagGGCGGTCTTGATGATAGTGGTGCAGCATCTGTGAGAGCCATAATGCATTGGCAGTATCGAACCATTTGCCGAGGGCAGAATTCTATCATGCATAATCTTT
                                 gactgat  putative branch site (score: 3)
                                       tttctta  CT-rich tract
       taaatattgctttt  TA-rich tract