1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...tttcttacaatattgaatactataccaattgcatttttaaacttctaatatcaactccagttatcttggatactgaatatatttaatgtggatcattcagGGGCACCCTTCAAAAAGTTTGCCTCCTTGCGTGATGAATGGGCCCTGAAGAATTGCTACATCAGTCCAG
species | Glycine max |
transcript | GLYMA09G01050.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GTAAATTCAAGCCCGTGATCAAGAAAGCAATGGTGGAGCTTGAAG GG-CACCCTTCAAAAEST: gi|213598262|gb|DB979705.1|DB979705
genomic: GTAAATTCAAGCCCGTGATCAAGAAAGCAATGGTGGAGCTTGAAGgtaaacatat ... gatcattcagGGGCACCCTTCAAAA
EST: GTAAATTCAAGCCCGTGATCAAGAAAGCAATGGTGGAGCTTGAAG GGGCACCCTTCAAAAAGTTTGCCTCCTTGCGTGATGAATGGGCCCTGAAGAEST: gi|15813400|gb|BI785675.1|BI785675
genomic: GTAAATTCAAGCCCGTGATCAAGAAAGCAATGGTGGAGCTTGAAGgtaaacatat ... gatcattcagGGGCACCCTTCAAAAAGTTTGCCTCCTTGCGTGATGAATGGGCCCTGAAGA
EST: GTAAATTCAAGCCCGTGATCAAGAAAGCAATGGTGGAGCTTGAAG GGGCACCCTTCAAAAAGTTTGCCTCCTTGCGTGATGAATGGGCCCTGAAGAEST: gi|7284788|gb|AW597213.1|AW597213
genomic: GTAAATTCAAGCCCGTGATCAAGAAAGCAATGGTGGAGCTTGAAGgtaaacatat ... gatcattcagGGGCACCCTTCAAAAAGTTTGCCTCCTTGCGTGATGAATGGGCCCTGAAGA
EST: GTAAATTCAAGCCCGTGATCAAGAAAGCAATGGTGGAGCTTGAAG GGGCACCCTTCAAAAAGTTTGCCTCCTTGCGTGATGAATGGGCCCTGAAGAEST: gi|4313349|gb|AI460468.1|AI460468
genomic: GTAAATTCAAGCCCGTGATCAAGAAAGCAATGGTGGAGCTTGAAGgtaaacatat ... gatcattcagGGGCACCCTTCAAAAAGTTTGCCTCCTTGCGTGATGAATGGGCCCTGAAGA
EST: GTAAATTCAAGCCCGTGATCAAGAAAGCAATGGTGGAGCTTGAAG GGGCACCCTTCANAAAGTTTGCCTCCTTGCGTGATGAATGGGCCCTGAAGA
genomic: GTAAATTCAAGCCCGTGATCAAGAAAGCAATGGTGGAGCTTGAAGgtaaacatat ... gatcattcagGGGCACCCTTCAAAAAGTTTGCCTCCTTGCGTGATGAATGGGCCCTGAAGA
taatatcaactccagttatcttggatactgaatatatttaatgtggatcattcagGGGCACCCTTCAAAAAGTTTGCCTCCTTGCGTGATGAATGGGCCCTGAAGAATTGCTACATCAGTCCAG
atactgaatatattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcttacaatattgaatactataccaattgcatttttaaacttctaatatcaactccagttatcttggatactgaatatatttaatgtggatcattcagGGGCACCCTTCAAAAAGTTTGCCTCCTTGCGTGATGAATGGGCCCTGAAGAATTGCTACATCAGTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - -tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - aactcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatactg