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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggatccaattacttgtttagtataatttcataatctacatcattaacaatccatgacatacctacaaaggaagttctaactctgacaactttcacagGAAATGAGAGATCAAGGAGTGACAGAAGATAGGCTACAACTGCTTAGGGGAGTAACTAGCTCCTTTAGGCCTGGAGTCCTAACTGCACTAATGGGAGTTA

Basic information

species Glycine max
transcript GLYMA08G21540.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G21540.2 (Glycine max), 3'ss of exon 16
lower sequence: Vv09s0002g03560.t01 (Vitis vinifera), 3'ss of exon 4
gtaaggatccaattacttgtttagtataatttc----ataatctacatc----attaacaatccatgac-----atacctacaaaggaagtt----------ctaactctgacaactttcacagGAAATGAGAGATCAAGGAGTGACAGAAGATAGGCTACAACTGCTTAGGGGAGTAACTAGCTCCTTTAGGCCTGGAGTCCTAACTGCACTAATGGGAGTTA
||||| ||||  || |||  || || | | | |    ||||  |  ||     ||  | |||    |||     |  || || ||   |  |          |||||||||   |   | |||||||||||  || |||||||||||||| || ||||| ||| | ||| |||  |||||  |  | ||||||||||||||||| |||||||| |||||||| |
gtaagaatccctttcctttgttggtgttactacctacataacatggatttcaaatggagaattttagactgtgaaggccaactaacttaactgccaacacaactaactctgttgatcataacagGAAATGAAGGAGCAAGGAGTGACAGAGGACAGGCTCCAATTACTTCGGGATGTAACGGGTGCATTTAGGCCTGGAGTCCTCACTGCACTGATGGGAGTCA

upper sequence: GLYMA08G21540.2 (Glycine max), 3'ss of exon 16
lower sequence: Vv09s0002g03640.t01 (Vitis vinifera), 3'ss of exon 13
----------------gtaaggatccaattacttgtttagtata-atttcataa-------tctacatcattaacaatccatgacatacctacaaaggaagttctaactctgacaactttcacagGAAATGAGAGATCAAGGAGTGACAGAAGATAGGCTACAACTGCTTAGGGGAGTAACTAGCTCCTTTAGGCCTGGAGTCCTAACTGCACTAATGGGAGTTA
                 |   | |   | |||     ||  ||  |||||| |        | || |   | ||       | || || |  | ||   |   ||||| |||   |   | |||||||||||  || |||||||||||||| || ||||| ||| ||||| |||  |||||  |  | || |||||||||||||| |||||||| |||||||| |
gtaagaatcccttcctttgttggtgttactacccacataacatggatttcaaatggagaattttagactgtgaaggccaactaacttaaccgccaacataa--ctaaccctgttgatcataacagGAAATGAAGGAGCAAGGAGTGACAGAGGACAGGCTCCAATTGCTTCGGGATGTAACGGGTGCATTCAGGCCTGGAGTCCTCACTGCACTGATGGGAGTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254319128|gb|GR828856.1|GR828856
EST:     CACTTGCAATGTCCTTTGACACTGTTAATTACTACGTCGACATGCCTGCA                         GAAATGAGAGATCAAGGAGTGACAGAAGATAGGCTACAACTGCTTAGGGGA
genomic: CACTTGCAATGTCCTTTGACACTGTTAATTACTACGTCGACATGCCTGCAgtaaggatcc ... actttcacagGAAATGAGAGATCAAGGAGTGACAGAAGATAGGCTACAACTGCTTAGGGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaacaatccatgacatacctacaaaggaagttctaactctgacaactttcacagGAAATGAGAGATCAAGGAGTGACAGAAGATAGGCTACAACTGCTTAGGGGAGTAACTAGCTCCTTTAGGCCTGGAGTCCTAACTGCACTAATGGGAGTTA
                                              ctttcac  CT-rich tract