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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaatgcttttatctacctcccttttttgcacttgcttttgcttgccttcactattgctataaatgctctttaattcattttgggcttttataaaatattacatcgttgacaacttacttggtcagAACAACCTTATGGAGATCAGGACAGATGCATTGAAGCTGCTAGTAATTTTGAGGCGGCCTGTTCCTCGTGCCGCTGCAACAGTAGGAGCCTGGCTTAACA

Basic information

species Glycine max
transcript GLYMA08G20980.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20980.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv09s0002g02590.t01 (Vitis vinifera), 3'ss of exon 13
gtataaatgcttttatctacctcccttttttgcacttgcttt--tgcttgccttcactattgctataaatgctctttaattcattttgggcttttataaaatattacatcgttgacaacttacttggtcagAACAACCTTATGGAGATCAGGACAGATGCATTGAAGCTGCTAGTAATTTTGAGGCGGCCTGTTCCTCGTGCCGCTGCAACAGTAGGAGCCTGGCTTAACA
                            |    | ||  |||  ||||  | | ||| |  | |  | |     ||| |   || |      |  || |||| | |  |  |   |||   | |||  ||||||||  | |  || |||||  |||||||  |||||||||| |  || |||| | |||| ||||||||||| ||||||||| | ||||| ||||||||||
---------------------------gtaaataattcttttagtgctcccttacaccacag-tgcagagttgttttga---atgtcaaaagtacatgaaatctgaagttttgtccaaacaagttgtgcagAACAATGTAACAGAAATCAGAGCAGATGCGCTGAAGCTGCTTGCCATGTTGAAGAGGCCAGTTCCTCGTGCTGCTGCAACAATTGGAGCTTGGCTTAACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7145814|gb|AW507736.1|AW507736
EST:     TTTTGATGTTTGCTTGCGCATTCCCACCTGCATTTGCTTTTGCTGCTGTG                         AACAACCTTATGGAGATCAGGACAGATGCATTGAAGCTGCTAGTAATTNTG
genomic: TTTTGATGTTTGCTTGCGCATTCCCACCTGCATTTGCTTTTGCTGCTGTGgtataaatgc ... acttggtcagAACAACCTTATGGAGATCAGGACAGATGCATTGAAGCTGCTAGTAATTTTG
EST: gi|4396701|gb|AI495698.1|AI495698
EST:     TTTTGATGTTTGCTTGCGCATTCCCACCTGCATTTGCTTTTGCTGCTGTG                         AACAACCTTATGGAGATCAGGACAGATGCATTGAAGCTGCTAGTAATTTTG
genomic: TTTTGATGTTTGCTTGCGCATTCCCACCTGCATTTGCTTTTGCTGCTGTGgtataaatgc ... acttggtcagAACAACCTTATGGAGATCAGGACAGATGCATTGAAGCTGCTAGTAATTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattcattttgggcttttataaaatattacatcgttgacaacttacttggtcagAACAACCTTATGGAGATCAGGACAGATGCATTGAAGCTGCTAGTAATTTTGAGGCGGCCTGTTCCTCGTGCCGCTGCAACAGTAGGAGCCTGGCTTAACA
                                        aacttac  putative branch site (score: 2)
                                          cttactt  CT-rich tract
               ttttataaaatattac  TA-rich tract