1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtttgttctctctctctctctctctctctctctctctcgtatgagcactgcatgcagcacactagggcatatctatatgatattgtcagatcagatgcacctctgtacttccaaactaatccaattttttagaatgttgaactctgacttgtgaacatgactatatatactcatctgcttcttgttattgacattcagAATGTTGGTCCACATTTTGAAAGATGGAATGCTGGTGTTCTAGGCCCAATTACATTAAGTGGTCTCAATGAGGGTAGGAGGGACTTAACTTGGCAGAAGT
species | Glycine max |
transcript | GLYMA08G20650.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GAGCTGGTGTTAACAAAATCTCTCTTCTAAGTGTTGCAGTTGGGCTTCCG AATGTTGGTCCACATTTTGAAAGATGGAATGCTGGTGTTCTAGGCCCAATTEST: gi|208084664|gb|GD879238.1|GD879238
genomic: GAGCTGGTGTTAACAAAATCTCTCTTCTAAGTGTTGCAGTTGGGCTTCCGgtttgttctc ... tgacattcagAATGTTGGTCCACATTTTGAAAGATGGAATGCTGGTGTTCTAGGCCCAATT
EST: AGCTGGTGTTAACAAAAATCTCTCCTCTAAGTGTTGCAGTTGGGCTTCCG AATGTTGGTCCACATTTTGAAAGATGGAATGCTGGTGTTCTAGGCCCAATTEST: gi|208281149|gb|GE079751.1|GE079751
genomic: AGCTGGTGTTAAC-AAAATCTCTCTTCTAAGTGTTGCAGTTGGGCTTCCGgtttgttctc ... tgacattcagAATGTTGGTCCACATTTTGAAAGATGGAATGCTGGTGTTCTAGGCCCAATT
EST: GAGCTGGTGTTAACAAAATCTCTCTTCTAAGTGTTGCAGTTGGGCTTCCG AATGTTGGTCCACATTTTGAAAGATGGAATGCTGGTGTTCTAGGCCCAATT
genomic: GAGCTGGTGTTAACAAAATCTCTCTTCTAAGTGTTGCAGTTGGGCTTCCGgtttgttctc ... tgacattcagAATGTTGGTCCACATTTTGAAAGATGGAATGCTGGTGTTCTAGGCCCAATT
ctgacttgtgaacatgactatatatactcatctgcttcttgttattgacattcagAATGTTGGTCCACATTTTGAAAGATGGAATGCTGGTGTTCTAGGCCCAATTACATTAAGTGGTCTCAATGAGGGTAGGAGGGACTTAACTTGGCAGAAGT
tattgac putative branch site (score: 2)
actatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttctctctctctctctctctctctctctctctcgtatgagcactgcatgcagcacactagggcatatctatatgatattgtcagatcagatgcacctctgtacttccaaactaatccaattttttagaatgttgaactctgacttgtgaacatgactatatatactcatctgcttcttgttattgacattcagAATGTTGGTCCACATTTTGAAAGATGGAATGCTGGTGTTCTAGGCCCAATTACATTAAGTGGTCTCAATGAGGGTAGGAGGGACTTAACTTGGCAGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT