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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaactgttttgctttactagtatactctgtcctgacatagtcagatactattaaatacctatatttttagttttgttcacttcttttatgttgccacagGAGGTTCTACGATGGATCAGATCAATAGTTGCAGAATTTGGAACTCCTAACATAAGTACTGAACAATTGGCTGACTACATTAATAAAACATTGAGTAGAG

Basic information

species Glycine max
transcript GLYMA08G16770.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7691294|gb|AW759487.1|AW759487
EST:     CGGCTGCTTTGAATGGGTTAGCTGGGCCCCTGCATGGTCTGGCCAATCAG                         GAGGTTCTACGATGGATCAGATCAATAGTTGCAGAATTTGGAACTCCTAAC
genomic: CGGCTGCTTTGAATGGGTTAGCTGGGCCCCTGCATGGTCTGGCCAATCAGgttattttgt ... gttgccacagGAGGTTCTACGATGGATCAGATCAATAGTTGCAGAATTTGGAACTCCTAAC
EST: gi|23057280|gb|BU577954.1|BU577954
EST:     CGGCTGCTTTGAATGGGTTAGCTGGGCCCCTGCATGGTTTGGCCAATCAG                         GAGGTTCTACGATGGATCAGATCAATAGTTGCAGAATTTGGAACTCCTAAC
genomic: CGGCTGCTTTGAATGGGTTAGCTGGGCCCCTGCATGGTCTGGCCAATCAGgttattttgt ... gttgccacagGAGGTTCTACGATGGATCAGATCAATAGTTGCAGAATTTGGAACTCCTAAC
EST: gi|21994889|gb|BQ786417.1|BQ786417
EST:     CGGCTGCTTTGAATGGGTTAGCTGGTCTTCTGCATGGTCTGGCCAATCAG                         GAGGTTCTACGATGGATCAGATCAATAGTTGCAGAATTTGGAACTCCTAAC
genomic: CGGCTGCTTTGAATGGGTTAGCTGGGCCCCTGCATGGTCTGGCCAATCAGgttattttgt ... gttgccacagGAGGTTCTACGATGGATCAGATCAATAGTTGCAGAATTTGGAACTCCTAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atactattaaatacctatatttttagttttgttcacttcttttatgttgccacagGAGGTTCTACGATGGATCAGATCAATAGTTGCAGAATTTGGAACTCCTAACATAAGTACTGAACAATTGGCTGACTACATTAATAAAACATTGAGTAGAG
     attaaatacctatatt  TA-rich tract