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gtaagttatttactctttttttttttcatggagaagaagtataattgcggctggactcttgcacagacatatgtacacacacacatggagagaatgtgacagaaagagatggagagatagtataattttttgttagaaaagtgattgtcttatctaactcttccttttctttttatggaatgtcccgccctcattcagGTGTTGAAGTGTCACCACTCTGTTCGTATGCTGGTGAAAACCTGGAACCAATATGTCGAGGAAGAACATTTCATGCACCTTGTGAGATCTCGTTCTAGTT
species | Glycine max |
transcript | GLYMA08G09170.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AGTTGCTGCAGGTGGCTTCTTAACACATTCAGTGCCCTTATATGCAACAG GTGTTGAAGTGTCACCACTCTGTTCGTATGCTGGTGAAAACCTGGAACCAAEST: gi|8282791|gb|BE020352.1|BE020352
genomic: AGTTGCTGCAGGTGGCTTCTTAACACATTCAGTGCCCTTATATGCAACAGgtaagttatt ... cctcattcagGTGTTGAAGTGTCACCACTCTGTTCGTATGCTGGTGAAAACCTGGAACCAA
EST: AGTTGCTGCAGGTGGCTTCTTAACACATTCAGTGCCCTTATATGCAACAG GTGTTGAAGTGTCACCACTCTGTTCGTATGCTGGTGAAAACCTGGAACCAAEST: gi|193334482|gb|FK301730.1|FK301730
genomic: AGTTGCTGCAGGTGGCTTCTTAACACATTCAGTGCCCTTATATGCAACAGgtaagttatt ... cctcattcagGTGTTGAAGTGTCACCACTCTGTTCGTATGCTGGTGAAAACCTGGAACCAA
EST: GTTGTCTGCAGGTGGCTTCTTAACACATTCAGTGCCCTTATATGCAACAG GTGTTGAAGTGTCACCACEST: gi|298176684|gb|HO026805.1|HO026805
genomic: GTTG-CTGCAGGTGGCTTCTTAACACATTCAGTGCCCTTATATGCAACAGgtaagttatt ... cctcattcagGTGTTGAAGTGTCACCAC
EST: AGTTGCTGCAGGTGGCTTCTTAACACATTCAGTGCCCTTATATGCAACAG GTGTTGAAGTGTCACCACTCTGTTCGTATGCTGGTGAAAACCTGGAACCAAEST: gi|151397105|gb|EV266978.1|EV266978
genomic: AGTTGCTGCAGGTGGCTTCTTAACACATTCAGTGCCCTTATATGCAACAGgtaagttatt ... cctcattcagGTGTTGAAGTGTCACCACTCTGTTCGTATGCTGGTGAAAACCTGGAACCAA
EST: AGTTGCTGCAGGTGGCTTCTTAACACATTCAGTGCCCTTATATGCAACAC GTGTTGAAGTGTCACCACTCTGTTCGTATGCTGGTGAAAACCTGGAACCTA
genomic: AGTTGCTGCAGGTGGCTTCTTAACACATTCAGTGCCCTTATATGCAACAGgtaagttatt ... cctcattcagGTGTTGAAGTGTCACCACTCTGTTCGTATGCTGGTGAAAACCTGGAACCAA
attgtcttatctaactcttccttttctttttatggaatgtcccgccctcattcagGTGTTGAAGTGTCACCACTCTGTTCGTATGCTGGTGAAAACCTGGAACCAATATGTCGAGGAAGAACATTTCATGCACCTTGTGAGATCTCGTTCTAGTT
atctaac putative branch site (score: 2)
tcccgccctcattc putative PPT
ttttctttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttatttactctttttttttttcatggagaagaagtataattgcggctggactcttgcacagacatatgtacacacacacatggagagaatgtgacagaaagagatggagagatagtataattttttgttagaaaagtgattgtcttatctaactcttccttttctttttatggaatgtcccgccctcattcagGTGTTGAAGTGTCACCACTCTGTTCGTATGCTGGTGAAAACCTGGAACCAATATGTCGAGGAAGAACATTTCATGCACCTTGTGAGATCTCGTTCTAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC